Query= MSMg01no052_p11.b1 MSMg01no052_p11.b1 CHROMAT_FILE:
MSMg01no052_p11.b1 PHD_FILE: MSMg01no052_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:44 2005
(588 letters)
>mm_chr1_122067965_122068952
Length = 988
Score = 1096 bits (567), Expect = 0.0
Identities = 579/583 (99%)
Strand = Plus / Minus
Query: 6 gaattcctgaccaaactcaacagcttcccagtgtagccctcacagtccatgtctcccaca 65
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gaattcctgaccaaactgaacagcttcccagtgtagccctcacagtccatgtctcccaca 729
Query: 66 tactgtatgtggggactcagggagtgtgcactgctacctcagaggtgcgtcccagaatgc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tactgtatgtggggactcagggagtgtgcactgctacctcagaggtgcgtcccagaatgc 669
Query: 126 atgtacctgatactcagaactgctcacactcacatacaccagattagtgaaggcagaagt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atgtacctgatactcagaactgctcacactcacatacaccagattagtgaaggcagaagt 609
Query: 186 agaataacagtgacatctaatggccaggagtcacacagcacttctttcaaagagaactga 245
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agactaacagtgacatctaatggccaggagtcacacagcacttctttcaaagagaactga 549
Query: 246 acacacattctaggttgaaaggctaaatcgggtgattttcccactgtacacactaggcgt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 548 acacacattctaggttgaaaggctaaatcgggtgattttcccactgtacacaccaggcat 489
Query: 306 atagtttaaattccacagcttggctggccccgagagtcttgagtgattattagaagttat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atagtttaaattccacagcttggctggccccgagagtcttgagtgattattagaagttat 429
Query: 366 gctgagtgttgtgcaaacaacatctcatttcattattctacattagttccactaggtcca 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gctgagtgttgtgcaaacaacatctcatttcattattctacattagttccactaggtcca 369
Query: 426 tttctctccaacagtgctgttagcggtccgcagttactgtgctaacaacctgtcaatcat 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tttctctccaacagtgctgttagcggtccgcagttactgtgctaacaacctgtcaatcat 309
Query: 486 ttaaaatgaccctcgccagagtgccgggcaaacctgaaaaggactatttgcattctgcac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttaaaatgaccctcgccagagtgccgggcaaacctgaaaaggactatttgcattctgcac 249
Query: 546 atatgcagagcaaatgccagtgcccttggtcaaatgatcacca 588
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atatgcagagcaaatgccagtgcccttggtcaaatgatcacca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_p11.g1 MSMg01no052_p11.g1 CHROMAT_FILE:
MSMg01no052_p11.g1 PHD_FILE: MSMg01no052_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:44 2005
(583 letters)
>mm_chr1_121915030_121916013
Length = 984
Score = 1108 bits (573), Expect = 0.0
Identities = 582/585 (99%), Gaps = 3/585 (0%)
Strand = Plus / Plus
Query: 1 tagag-aatatggggccaggaaagggaagatcagccacaggtacacagaaactaattaga 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagagaaatatggggccaggaaagggaagatcagccacaggtacacagaaactaattaga 260
Query: 60 tgagaaagcacagcaattattgacctcagggaagacaaaatgcccgaggactcataatcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagaaagcacagcaattattgacctcagggaagacaaaatgcccgaggactcataatcc 320
Query: 120 tcttagagggacacgcttcaacagctaacaatacatcactgtcaaaagaagccattataa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttagagggacacgcttcaacagctaacaatacatcactgtcaaaagaagccattataa 380
Query: 180 acatggagcgaggctttcactgaaagtgatgtgaacagagtgtacggaatctgggagtga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatggagcgaggctttcactgaaagtgatgtgaacagagtgtacggaatctgggagtga 440
Query: 240 gaaacatttctagggagaatttaaaacatctaaatctttaatggccttactaggaagctt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaacatttctagggagaatttaaaacatctaaatctttaatggccttactaggaagctt 500
Query: 300 gagatattccaataatccaagaaatagtgctgtttaagaatgtgggggttgtgggttgag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagatattccaataatccaagaaatagtgctgtttaagaatgtgggggttgtgggttgag 560
Query: 360 gcgctagagagatgaggttgaaggcaagtactgcttccttctactgtttggttctcagaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcgctagagagatgaggttgaaggcaagtactgcttccttctactgtttggttctcagaa 620
Query: 420 acagtcgggtggcactgtaactgcctcaatctctggctccaggggtctggccccctcttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagtcgggtggcactgtaactgcctcaatctctggctccaggggtctggccccctcttt 680
Query: 480 tggcctctgtgggtacttgcacttatgcacatctcatccgtagatatatacatatacaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggcctctgtgggtacttgcacttatgcacatctcatccgtagatatatacatatacaca 740
Query: 540 taatctttttt-aaaaaaagatttaaaattagttctatctccaga 583
||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 741 taatc-ttttttaaaaaaagatttaaaattagttctatctccaga 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space: 558102
Effective search space used: 558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
