BAC Information

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BAC

Clone NameMSMg01-053A08
Chromosome6 (Build37)1 (Build37)
Map Location 56,465,336 - 56,465,67766,852,425 - 66,852,810
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
Downstream geneEG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053A08.T7 (MSMg01no053_a08.b1)MSMg01-053A08.TJ (MSMg01no053_a08.g1)
ACCAG281356AG281357
length710701
length of high quality
(start - end)
378 (67 - 444)392 (71 - 462)
definitionCHROMAT_FILE: MSMg01no053_a08.b1 PHD_FILE: MSMg01no053_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:48 2005CHROMAT_FILE: MSMg01no053_a08.g1 PHD_FILE: MSMg01no053_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:48 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,465,336 - 56,465,677)(66,852,425 - 66,852,810)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGACCATTGCGGCAACAGGTAGGCAGGCATAGCCTGGAGCAGCAGCT
GAAGGCTTGCATCCGATTCACAGGTAGCAGGTGGAGAGAGACTGGTCCTG
GTATGGACTTTTGAAACCTCCAAGGCTATAGTCAGTGACACCCTTCCTCC
AACAAGACCATACCGCCAATCCTCCCTAAAATAGTTCTACCAGCTAAAAA
CTAAGCATTCAAACACATAAGTCTATGGGAGCCATGTTTATTCAAACCAC
CAAAGCCAGCCAGAAATACTTAATCACAGTCAGATCTCTTTTTTAAATAA
TATGGCAGATCTCTGCTCAGCATTTTCTGAGGCCTTTGGGGGTCAACTGC
ACATTTTATGTGACACATTGAACTTGTTTGCTTTCTACCACATAACCTTA
CTTTCACTTGGTTTTCAACACTAGGCAAGTATTATATTCTCAGCCTGTGG
CTTGCCTCTTAATTTACTGCCTGACATATAGGATGCCGCTGATATTATAA
TAACCAAGGCTTATACATTATATAACTATTTCTGTTTATCCCCTTTATCT
TTTCATAATCCAAGTTTTAAAATCCGGATGAAACACTTTTTTTATACAAA
GAACAGTCTAGTGTTTTATTTGAATCACTCCCCGATTTCTCCTCTCCCTT
TTTTAATTTA
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTATGCACTATCAAGATATAAACTATAGG
GGCTGGTGAAATGGCTCAGCAGCTAAGAGCACTGACTGCTCTTCCGAAGG
TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAA
TGAGATCTGATGCCCTCTTCTGGTGCATCTTGGGGCTACAGTGTACTTAT
ATATAATAATTAAAAATTAAAAAAAATAATAAATTCAGGGCAGCATTAAA
AAAAAAGATATAAACTATAGACTTTCATGATTTTTGCTGGGTTAAGGAAT
TTCTTTCCTTTGTCCTAAATTTCAGGAGTTCTTTATTTCCTTATAAGTGG
ATTTTTACAATCTGGCAAATGCTTTTACTATATGAGACCCTGGTTTGCTT
TTTTTGTTTGCTTGTTTGCTTTTGTTTTTTTAAACTTTGCTATGGGGAAT
TTCAGTGATTGCTTAAAAAATGTTGAACTCGCCTTGAGTTCATGAAATAT
CCCATACTTGATTTGTTCCCATTACCCCGTTTGTATCGCGCTGCAATTGC
ACATTCCTTGTTTAAAAATGAATTAAATAGGTATTTCCTACCAATTTAAA
ATTACATGGCACGCTTGAGGGCATCATAACCCCCCCTTCTTGATTCCCTC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_a08.b1 MSMg01no053_a08.b1 CHROMAT_FILE:
MSMg01no053_a08.b1 PHD_FILE: MSMg01no053_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:48 2005
         (378 letters)



>mm_chr6_56464900_56465677
          Length = 778

 Score =  607 bits (314), Expect = e-178
 Identities = 335/342 (97%)
 Strand = Plus / Minus

                                                                       
Query: 35  gaaggcttgcatccgattcacaggtagcaggtggagagagactggtcctggtatggactt 94
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gaaggcttgcatctgattcacaggtagcaggtggagagagactggtcctggtatggactt 719

                                                                       
Query: 95  ttgaaacctccaaggctatagtcagtgacacccttcctccaacaagaccataccgccaat 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttgaaacctccaaggctatagtcagtgacacccttcctccaacaagaccataccgccaat 659

                                                                       
Query: 155 cctccctaaaatagttctaccagctaaaaactaagcattcaaacacataagtctatggga 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cctccctaaaatagttctaccagctaaaaactaagcattcaaacacataagtctatggga 599

                                                                       
Query: 215 gccatgtttattcaaaccaccaaagccagccagaaatacttaatcacagtcagatctctt 274
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct: 598 gccatgtttattcaaaccaccaaagccagccagaaatacataagcacagtcagatatctt 539

                                                                       
Query: 275 ttttaaataatatggcagatctctgctcagcattttctgaggcctttgggggtcaactgc 334
           |||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 538 ttttaaataatatgacagatctctgctcagtattttctgagtcctttgggggtcaactgc 479

                                                     
Query: 335 acattttatgtgacacattgaacttgtttgctttctaccaca 376
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 acattttatgtgacacattgaacttgtttgctttctaccaca 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no053_a08.g1 MSMg01no053_a08.g1 CHROMAT_FILE:
MSMg01no053_a08.g1 PHD_FILE: MSMg01no053_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:48 2005
         (392 letters)



>mm_chr1_66852019_66852810
          Length = 792

 Score =  731 bits (378), Expect = 0.0
 Identities = 384/386 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   tgcactatcaagatataaactataggggctggtgaaatggctcagcagctaagagcactg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tgcactatcaagatataaactataggggctggtgaaatggctcagcagctaagagcactg 733

                                                                       
Query: 65  actgctcttccgaaggtcctgagttcaaatcccagcaaccacatggtggctcacaaccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 actgctcttccgaaggtcctgagttcaaatcccagcaaccacatggtggctcacaaccac 673

                                                                       
Query: 125 ccgtaatgagatctgatgccctcttctggtgcatcttggggctacagtgtacttatatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ccgtaatgagatctgatgccctcttctggtgcatcttggggctacagtgtacttatatat 613

                                                                       
Query: 185 aataattaaaaattaaaaaaaataataaattcagggcagcattaaaaaaaaagatataaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aataattaaaaattaaaaaaaataataaattcagggcagcattaaaaaaaaagatataaa 553

                                                                       
Query: 245 ctatagactttcatgatttttgctgggttaaggaatttctttcctttgtcctaaatttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctatagactttcatgatttttgctgggttaaggaatttctttcctttgtcctaaatttca 493

                                                                       
Query: 305 ggagttctttatttccttataagtggatttttacaatctggcaaatgcttttactatatg 364
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 492 ggagttctttatttccttataagtggatttttacaatctgggaaatgcttttactatatg 433

                                     
Query: 365 agaccctggtttgctttttttgtttg 390
           ||||||||||||| ||||||||||||
Sbjct: 432 agaccctggtttgttttttttgtttg 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)