BAC Information

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BAC

Clone NameMSMg01-053A20
Chromosome1 (Build37)
Map Location 189,833,170 - 189,833,480
singlet/doubletsinglet
Overlap geneEsrrg
Upstream geneSpata17, Gpatch2, 9330162B11Rik
Downstream geneUsh2a, Kctd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053A20.T7 (MSMg01no053_a20.b1)MSMg01-053A20.TJ (MSMg01no053_a20.g1)
ACCAG281378AG281379
length720699
length of high quality
(start - end)
396 (45 - 440)377 (72 - 448)
definitionCHROMAT_FILE: MSMg01no053_a20.b1 PHD_FILE: MSMg01no053_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:51 2005CHROMAT_FILE: MSMg01no053_a20.g1 PHD_FILE: MSMg01no053_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCGTTTTTGACAGCTGAGTAGTACTCCATTGTGTAAATGTACCAC
ATTTTCTGTATCCATTCCTCTGCTGAAGGACACCTGGGTTCTTAGCAGCC
AACCATTGGACTAAGCACAGGGTCCCTAACAGAGGAGTTGGAGAAGGGAC
TGAAAAAGTTGAGGGGGTTTGCAACCCCATAGGAAGAACAATAATATCAA
CCAACCATACCCCCACACACACACACACACACCAGAACTCCCAGGGACTA
AGCCATCAACAAAGGAGTACACATGGCTCCAGCTGCATGTGTATCAGAGG
ATGGCTTTGTCATGCATCATTGGAAGGAGATGTCCTTGGTCCTATGAAGG
CTCAATAGATGCCCCAGCTTAGGGAAATTGAGGGTGGGGAGGTGGGAGTT
CTCTCACTTTTCCTTTTTTCTTTTGTCCCTTTATCTTCTCCTCCTTTTTC
CTACTTCTTTTTTCATCCCCTTCCATCCGCTTCTTTCCCTTTTTTCTTCT
TTTCTCCTTTTCCTTTTTATTTCCTCCCTTCCCTCTCAATCTTTCTTTTC
CCTACATCTTCTTTTTTTTTTTTTATTTTATTTCCCTTTACAGTTCCCCT
TTTTCTGTAGATATTTGGGCTTTTTTATTCATGCTTCCCCCCCTTTTTTT
CCGGCTCTTTTCTCTATCTC
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACGTGTCTCCCATATTCTGCTACAGCCCA
TCAGAGACTAAGGACCAGTTGTCATTTCCAATTTGATTACGGAATATGAA
CAGCATAGAAATAAATTCAATTATTGGGCCCGATCACACAAAATTGCTGA
TATTTGACCATTCCTTTTTTTTTTTGACCTATAAAACAGCAACTTCATAC
AGTTCAACCTAATAAAATTAGAATCCAATTATATGGTTTCCATGCAAAAT
TAAAAACACTCTAATGTTTTTACTGGTAATTTCACAATTTAAAGCTTGAC
CTTTGCAGTAATTTTTTTTTTTTTACTATTTTTTTTAAGGTTTGTTTTTT
AAAGTTTCCTATCAAAATCACAGTATTTATCAATGTTAAAAATTGAGGCT
GGTCTTGGTTGGGGGTGGGGAATAGCTTATCAATAGAGTCCTTGATAGCC
TCTGCTTATTTCCAGGTATGATCCAGGGTGCCACTCACATTAGAAAAATA
CAAGACCAACCATATCTAAGAACTGCCCGCCTACTCTAGACTTGCTTGTC
TAGGCCTATTCCTTAAAAACCTACGATCAATCATGTTATGTAATAGCTTC
CACTTATTAGCCCTATACCGCGGATTCCTAACAAGTCCCCCTTTGTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_a20.g1 MSMg01no053_a20.g1 CHROMAT_FILE:
MSMg01no053_a20.g1 PHD_FILE: MSMg01no053_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:51 2005
         (377 letters)



>mm_chr1_189833170_189833946
          Length = 777

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%), Gaps = 1/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgtgtctcccatattctgctacagcccatcagagactaaggaccagttgtcatttccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acgtgtctcccatattctgctacagcccatcagagactaaggaccagttgtcatttccaa 252

                                                                       
Query: 61  tttgattacggaatatgaacagcatagaaataaattcaattattgggcccgatcacacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttgattacggaatatgaacagcatagaaataaattcaattattgggcccgatcacacaa 192

                                                                       
Query: 121 aattgctgatatttgaccattcc-tttttttttttgacctataaaacagcaacttcatac 179
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 191 aattgctgatatttgaccattccttttttttttttgacctataaaacagcaacttcatac 132

                                                                       
Query: 180 agttcaacctaataaaattagaatccaattatatggtttccatgcaaaattaaaaacact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 agttcaacctaataaaattagaatccaattatatggtttccatgcaaaattaaaaacact 72

                                                                       
Query: 240 ctaatgtttttactggtaatttcacaatttaaagcttgacctttgcagtaattttttttt 299
           ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 71  ctaatgtttttacaggtaatttcacaatttaaagcttgacctttgcagtgattttttttt 12

                      
Query: 300 ttttactattt 310
           |||||||||||
Sbjct: 11  ttttactattt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)