BAC Information

Click to search

BAC

Clone NameMSMg01-053H18
Chromosome1 (Build37)
Map Location 81,533,174 - 81,533,521
singlet/doubletsinglet
Overlap genenone
Upstream geneDock10, LOC665092, 9430031J16Rik
Downstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1, Col4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053H18.T7 (MSMg01no053_h18.b1)MSMg01-053H18.TJ (MSMg01no053_h18.g1)
ACCAG281688AG281689
length715710
length of high quality
(start - end)
69 (133 - 201)348 (71 - 418)
definitionCHROMAT_FILE: MSMg01no053_h18.b1 PHD_FILE: MSMg01no053_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:24 2005CHROMAT_FILE: MSMg01no053_h18.g1 PHD_FILE: MSMg01no053_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATAATTTGCGGCGCTAAACGACTCCTATTCCAAGAGGATCCGCGGAA
TTCTCACCTGTGCACTACCGAATGGCAGAAAAGCACCTGAAGAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCATAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGTAGTTGCTCACAA
AATTGTACATAGTACTACCTGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCTCTCTGGTAAGAAGGACTCATGCTCCACTATGTT
CTTAGCAGCCTTATATATAAAATTAGTCACAAGCTGGAAAGAACCCAGAT
GCCCCTCAATATAGGAATGGACACCTATAACGCGGTATATCTATGCTATG
GAGTACTCACTCCCTATTCCACATAATGTATTTTTTATTTTTCTAGTCTA
ATGGATGGATTTGGAGGGCCTCATTTATGAGTGTCGTTTTACCTTCCTTT
GGCCTTCCCTCTCTATGTACTCCCTGATTACTGTCACTCATCCCTTTACC
TACCCCACTCATGATTTGTTATTACATTTTCCACATATATTAACCTTCCC
GAACACGCAATACTA
CGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACCCTGGGTCTCAGAAGCCTATTTTCAGAA
GGGGACATTTTGCTATGGTAAACAAGAAAGCCACCCCAGTAAGTAGTTCA
ATCCATTTGTCTGGTAGTTTGGGCATAGGATTTCGGTCAGCATTCATGAA
CACCCGTCTTATCTATAAGTGAGGAGAGGAAAGGAACCTAAATGTGATGG
ACATTTTAGCCAGAGAGCAGACAGTTTCTGTGAACACTTTATCCCACTGA
AATACAGATGTTTACTAATATATTTTAGAATTATATGGAAATTAAAACCA
CTATAAATATACTATATATCACTGAATTGTATACTCCAATATTATATGAT
TGATAATTGAATAATTACATATTTATTATTTATATATACTTTATGTAATT
ATACATTTATAATATAATATTATGTATAATTATATAGGTTATATGACATA
ATCATATATCTTGTTTATTATTCACATATAACGTATAAATATATAACATT
GTTATATAATTCTATATGATGTACACCCGATCTATTTACAAGCACCGTCC
CCTATTTTTACTTTCTCATATCTTATTCCTTCGATTTTCCCATTTTTCTA
ACCCCCGTCTGTTCCTTCGTCTTTCTCTTGTTATTCCCGCGTTTACGTTT
TTCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_h18.g1 MSMg01no053_h18.g1 CHROMAT_FILE:
MSMg01no053_h18.g1 PHD_FILE: MSMg01no053_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:24 2005
         (348 letters)



>mm_chr1_81532974_81533721
          Length = 748

 Score =  634 bits (328), Expect = 0.0
 Identities = 343/348 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accctgggtctcagaagcctattttcagaaggggacattttgctatggtaaacaagaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 accctgggtctcagaagcctattttcagaaggggacattttgctatggtaaacaagaaag 489

                                                                       
Query: 61  ccaccccagtaagtagttcaatccatttgtctggtagtttgggcataggatttcggtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccaccccagtaagtagttcaatccatttgtctggtagtttgggcataggatttcggtcag 429

                                                                       
Query: 121 cattcatgaacacccgtcttatctataagtgaggagaggaaaggaacctaaatgtgatgg 180
           |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 428 cattcatgtacacccgtcttgtctataagtgaggagaggaaagaaacctaaatgtgatgg 369

                                                                       
Query: 181 acattttagccagagagcagacagtttctgtgaacactttatcccactgaaatacagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 acattttagccagagagcagacagtttctgtgaacactttatcccactgaaatacagatg 309

                                                                       
Query: 241 tttactaatatattttagaattatatggaaattaaaaccactataaatatactatatatc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tttacaaatatattttagaattatatggaaattaaaaccactataaatatactatatatc 249

                                                           
Query: 301 actgaattgtatactccaatattatatgattgataattgaataattac 348
           ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 actaaattgtatactccaatattatatgattgataattgaataattac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)