BAC Information

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BAC

Clone NameMSMg01-053K05
Chromosome1 (Build37)15 (Build37)
Map Location 196,447,780 - 196,448,01722,399,095 - 22,399,342
singlet/doubletsingletsinglet
Overlap genePlxna2
Upstream geneLOC667208, EG623172
Downstream geneCd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053K05.T7 (MSMg01no053_k05.b1)MSMg01-053K05.TJ (MSMg01no053_k05.g1)
ACCAG281799AG281800
length715696
length of high quality
(start - end)
238 (72 - 309)248 (69 - 316)
definitionCHROMAT_FILE: MSMg01no053_k05.b1 PHD_FILE: MSMg01no053_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:36 2005CHROMAT_FILE: MSMg01no053_k05.g1 PHD_FILE: MSMg01no053_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:36 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(196,447,780 - 196,448,017)(22,399,095 - 22,399,342)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGGA
ATTCTTCTATCTTCATGCCAGGAGGTCAGCGGATGGAGGGCTGCTTGCAA
CTGTAGGAGTTTTCCAGGGTGATTACACAGAAAGTTGTGCATTTCAATTA
GGAACAGCTGAATTCCTCCAGCCAGGGTTAAGCTCTTCTAGGAGCACGGG
TTCTTACTGGAAAGCCCCAACATTCATAGTCAGCCCAGAGCGAAGAATGA
AGTTTCAAGATCTGGAAAGAGACTGAGTATGACAGGCCTGCTATTGTGCG
GAATTGCAGAGAGCTGATTTTGACTCCAGGCCTGTTGAAAGCAGCCATCT
CAGCATTGTCTGTGTTCTAGCCCAGAAACTCAATTGTACTGATCTGGTCT
ACTGCATGGATGGCTGTGCCTCAAAATGCCCAATCCCCCTCAGATGTTTT
TCTGAGTATTCTGGTAGTCTCACTCCCCAATGCCCTTCACTTTCTGCCTG
TCGCGCATATGCATGGCCTCGATATCTAATCTGCCTGTTGACCCGGGATC
TCCACTGTATCATTTCTTGTCCTCTATTACTCCTCTTCCTTCTTTTACGT
CACGTCCCCGTATTTGTTTCTCCTATGTTGATGCCTTCTTTCTCATTACA
ATCTCTCCCTTCCTTCTTACTTTTTTTTAGAGTAATTTTTTTTATACCAT
CCCTCCCCTTCTTCN
CGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCGCAGAAATTCTGAGTGCTTCTGCGAATAATTTGAGTAA
ACAAGAGTCTTGTGACCTCCCCTTCTTTAAAACATGGAATTGTGTCTAGA
ATGTGTTTTCTGGCTCCTCCCAGGTGTAGTGGATAGGACTGTCTACTTCA
AACTACTCACGGTGTCTTGTTGATGGTATTCAAGTAAATGTATAAATTGT
CTTTTATATGCCTGTATTGGAAACCACATTTTGTATGTGCAACTGAACCT
TGTGATGGTCTACAGCATGTTCTCAGGAGAAAAGGTAATTATTATTATTA
TTATTATTATTATTATTATTAAAATCTTTTTTTACACAGTCCATCCATTA
TCCCCCTCCTAGTCTGCCCTCTGAGAGTTCTTCATCCCATTCCTCCTCCC
CCATCTCCAAGATGATATCCCCACCCCACCAGACTTCTCTACTTCCTGGT
TTAGGTGCTTCTTCTCTTCCTGAGGCCAGACCAGTCAGTCCTCTACTATA
AATGTCTTGGGAGCCTCATATCACCTTGTGTATGGCTTCAGGCTGGTGGA
CCCGTGCCTGATAAACCTCTGTGCCCCTGGCGAATTTATACTGAATGATT
GTTCCTCCTATTGCTTTTTTCCTCCTCCTTTTCTTCTTTCCGCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_k05.b1 MSMg01no053_k05.b1 CHROMAT_FILE:
MSMg01no053_k05.b1 PHD_FILE: MSMg01no053_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:36 2005
         (238 letters)



>mm_chr1_196447580_196448217
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggtcagcggatggagggctgcttgcaactgtaggagttttccagggtgattacacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaggtcagcggatggagggctgcttgcaactgtaggagttttccagggtgattacacaga 379

                                                                       
Query: 61  aagttgtgcatttcaattaggaacagctgaattcctccagccagggttaagctcttctag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 378 aagttgtgcatttcaattaggaacagctgaattcctccagccagggttaagctcctctag 319

                                                                       
Query: 121 gagcacgggttcttactggaaagccccaacattcatagtcagcccagagcgaagaatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gagcacgggttcttactggaaagccccaacattcatagtcagcccagagcgaagaatgaa 259

                                                                     
Query: 181 gtttcaagatctggaaagagactgagtatgacaggcctgctattgtgcggaattgcag 238
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 258 gtttcaagatctggaaagagactgagtatgacaggcctgctattgtgtggaattgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no053_k05.g1 MSMg01no053_k05.g1 CHROMAT_FILE:
MSMg01no053_k05.g1 PHD_FILE: MSMg01no053_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:36 2005
         (248 letters)



>mm_chr15_22398895_22399542
          Length = 648

 Score =  449 bits (232), Expect = e-131
 Identities = 244/248 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctgagtgcttctgcgaataatttgagtaaacaagagtcttgtgacctccccttcttt 60
           |||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 448 attctgagtgcttctgagaataatttgagtaaacaagagtcttgtgacctcagtttcttt 389

                                                                       
Query: 61  aaaacatggaattgtgtctagaatgtgttttctggctcctcccaggtgtagtggatagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaaacatggaattgtgtctagaatgtgttttctggctcctcccaggtgtagtggatagga 329

                                                                       
Query: 121 ctgtctacttcaaactactcacggtgtcttgttgatggtattcaagtaaatgtataaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctgtctacttcaaactactcacggtgtcttgttgatggtattcaagtaaatgtataaatt 269

                                                                       
Query: 181 gtcttttatatgcctgtattggaaaccacattttgtatgtgcaactgaaccttgtgatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtcttttatatgcctgtattggaaaccacattttgtatgtgcaactgaaccttgtgatgg 209

                   
Query: 241 tctacagc 248
           ||||||||
Sbjct: 208 tctacagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)