BAC Information

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BAC

Clone NameMSMg01-054B08
Chromosome1 (Build37)
Map Location 37,987,489 - 37,987,804
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776
Downstream gene2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3, Lonrf2, Chst10, EG625775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054B08.T7 (MSMg01no054_b08.b1)MSMg01-054B08.TJ (MSMg01no054_b08.g1)
ACCAG282117AG282118
length872707
length of high quality
(start - end)
319 (108 - 426)506 (76 - 581)
definitionCHROMAT_FILE: MSMg01no054_b08.b1 PHD_FILE: MSMg01no054_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:11 2005CHROMAT_FILE: MSMg01no054_b08.g1 PHD_FILE: MSMg01no054_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCNCCCCCCCCCCCCCCCCCTTTTCCCNTCCTTTNNNCGCCGCTAC
CACTTGGGTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCTGTTTTATCTGCTTCTGACCCACAAGCTTGTA
GGCTGAGGAAACTCTTCTTCAGTGCGGACCTGTCCTGCCAGACAAGTCAC
TTCCTTAGGAGACCCACAGCTGGATTTGAGGCTGCTGTGGGTTTATCCTG
TGTGTTGGACTGCTGGTCTCTGGGGTTGTCTGGAGTAAGCTTTGGGTGGA
ACTTCTGCTTCCCGCTCTCCTGGGCAGCAGCTTGTCTGGAGTGCCTTGTT
TAAGTACCCTGTCACTCCTTTTGTGAAGCTCCAAAGCTTTTCTAGTCTTT
CTGGGTTTTGGGGTTTTTGGTTGTTTTGGCTTTTTGCTTTTTCCCCAACC
ACCCACTATATCCTACACAGCTGTGTATCCCCCCCCTATCATTTCCTCTC
CTTCTCCCTTTCCTATTTATTTCTTTCTTATCTATTTTTTCTTCCCTCTT
CTTCCCCGCCTCGTTGCTCCGCCCCTTCTTCCCCCCTTAATTCTAACCCT
TTAATTTATCTCTCTATTCTTTTCCCGACGACCACCCTCCTGGCCCTACC
CCCGTCTCTTTGTCCTTCATCCTACTCCCCACGCCTCTGTATTCACTAAC
CTTCTCGCCATCCCACAACCCTTCCCTGTTACTATCATACTGTTGTCTCT
TCCCCCACCTCTCCCCCTCCCCACTCACGCCACCCTCCCCATTCTTTTAT
ATTCTTCATACTTCCTATTGTAGTGGCTGCCTCCTTTCTCCTCTCTTTTT
TACTCCTTTCCTCTCTTCTCCC
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAAAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGA
TCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGAT
GTGGTACATCTACACAATGGAGTACCACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAC
CGGATATTAGCCCAAAACCTAAGATATCCAAGATATATGATACCATTTCC
TAAACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_b08.b1 MSMg01no054_b08.b1 CHROMAT_FILE:
MSMg01no054_b08.b1 PHD_FILE: MSMg01no054_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:11 2005
         (319 letters)



>mm_chr1_37987286_37988004
          Length = 719

 Score =  534 bits (276), Expect = e-156
 Identities = 306/316 (96%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctgttttatctgcttctgacccacaagcttgtaggctgaggaaactcttcttc 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaattcctgttttagatgcttctgacccacaagcttgtaggctgaggaaactcttcttc 460

                                                                       
Query: 64  agtgcggacctgtcctgccagacaagtcacttccttaggagacccacagctggatttgag 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 agtgcggacctgtcctgacagacaagtcacttccttaggagacccacagctggatttgag 400

                                                                       
Query: 124 gctgctgtgggtttatcctgtgtgttggactgctggtctctggggttgtctggagtaagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 399 gctgctgtgggtttatcctgtgtgttggactgctggtctctggggttgtctggagtatgc 340

                                                                       
Query: 184 tttgggtggaacttctgcttcccgctctcctgggcagcagcttgtctggagtgccttgtt 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 339 tttgggtggaacttctgcttcccgctctcctgggcagcagcttgtttggagtgccttgtt 280

                                                                       
Query: 244 taagtaccctgtcactccttttgtgaagctccaaagcttttctagtctttctgggttttg 303
           |||| |||||| ||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 279 taagcaccctgccactccttttgtgactctccaaagcttttctagtctttctgggttttg 220

                           
Query: 304 gggtttttggttgttt 319
           || |||||||||||||
Sbjct: 219 ggttttttggttgttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)