XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCGT
CACGATGGTCATGAACTCTAACCCTCTGGAACCATGAGCTCCAAATAAAT
ACTTTCTTTTATATCCCTTATTTATTATATATTATTACAGCAAAAGCAAT
AAAGACAGTAAATAATCATTTATTTTGATTTTATAGGAAAAGTTTTCCTG
AGTCAGAAAACTTATCATCCTATAGTATATATACAATAAGATAGATGGTG
AAGGTATATAGTTTTATTCATTAATTTAACTCATGTATAAATTTGAATGA
GTATATAGTGCTAGTTTTCTGAAACTATTATCCACACTCTTAATTGGTTT
TGAATTATATAGATTTTTATGAGATATATAATTTTAAAATCATATGAATT
TTATTATATAGCTTTTTCACAGATAGCATTGCTATTTTAAGTTTAAATTA
ATGAAAATCAAAATGTTTGCAACCTATCCTGATTGTTTTGCCCCACTCTT
GCATACTAAACTGAAGGTACTTAGTCTCTGCAACATTATATGATATTCCC
ACAGCAACAGACACATAATGATGTTAAATGGATTGGGAGAATCCAAACAA
ATGCAATTGGTATAGTCATTTGTTGTTTCCAGTCAACTGAGAGATTTCTA
AGGATTTGGTGCCACCTGGCCTGATACTCAACTTG

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATC
ATGAATGGGTGTTGGATCTTGCCAAATGCTTTTTCTGCATCCAACGAGAT
GATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGA
TGGATATTCGTGTATTAAACCATCCCTGCATTCCTGGAATAAAACCTACT
TGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCAAG
AATTTTATTGAGGATTTTTGTCTTCGATATTCATAAGAGAAATTGGTCTG
AAGTTCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAAT
AGTGGCTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGT
GAAAAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAG
AACTCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACT
ATTTATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGT
CAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTG
TCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTACAGCCTTTTGTATAA

Query= MSMg01no054_d13.b1 MSMg01no054_d13.b1 CHROMAT_FILE:
MSMg01no054_d13.b1 PHD_FILE: MSMg01no054_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:22 2005
         (650 letters)



>mm_chr1_17342331_17343380
          Length = 1050

 Score = 1141 bits (590), Expect = 0.0
 Identities = 634/650 (97%), Gaps = 3/650 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccgtcacgatggtcatgaactctaaccctctggaaccatgagctccaaataa 63
           |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ggaattctccatgatgatggtcatgaactctaaccctctggaaccatgagctccaaataa 601

                                                                       
Query: 64  atactttcttttata---tcccttatttattatatattattacagcaaaagcaataaaga 120
           |||||||||||||||   |||||||||||| ||||||||| |||||||||||||||| ||
Sbjct: 600 atactttcttttatatcttcccttatttatgatatattatcacagcaaaagcaataagga 541

                                                                       
Query: 121 cagtaaataatcatttattttgattttataggaaaagttttcctgagtcagaaaacttat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 540 cagtaaataatcatttattttgattttataggaaaagttttcctgagtcagaaagcttac 481

                                                                       
Query: 181 catcctatagtatatatacaataagatagatggtgaaggtatatagttttattcattaat 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 480 catcctatagtatatatacaataagatagatggtgaaggtatacagttttattcattaat 421

                                                                       
Query: 241 ttaactcatgtataaatttgaatgagtatatagtgctagttttctgaaactattatccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttaactcatgtataaatttgaatgagtatatagtgctagttttctgaaactattatccac 361

                                                                       
Query: 301 actcttaattggttttgaattatatagatttttatgagatatataattttaaaatcatat 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 actgttaattggttttgaattatatagatttttatgagatatataattttaaaatcatat 301

                                                                       
Query: 361 gaattttattatatagctttttcacagatagcattgctattttaagtttaaattaatgaa 420
           ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 300 gaattttattatatagctttttcgcagatagcattgctattttaagttcaaattaatgaa 241

                                                                       
Query: 421 aatcaaaatgtttgcaacctatcctgattgttttgccccactcttgcatactaaactgaa 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 240 aatcaaaatgtttgcaacctatcctgattattttgccccactcttgcatactaaactgaa 181

                                                                       
Query: 481 ggtacttagtctctgcaacattatatgatattcccacagcaacagacacataatgatgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ggtacttagtctctgcaacattatatgatattcccacagcaacagacacataatgatgtt 121

                                                                       
Query: 541 aaatggattgggagaatccaaacaaatgcaattggtatagtcatttgttgtttccagtca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aaatggattgggagaatccaaacaaatgcaattggtatagtcatttgttgtttccagtca 61

                                                             
Query: 601 actgagagatttctaaggatttggtgccacctggcctgatactcaacttg 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  actgagagatttctaaggatttggtgccacctggcctgatactcaacttg 11


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)