Query= MSMg01no054_p22.b1 MSMg01no054_p22.b1 CHROMAT_FILE:
MSMg01no054_p22.b1 PHD_FILE: MSMg01no054_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:18 2005
(644 letters)
>mm_chr1_178369645_178370687
Length = 1043
Score = 1222 bits (632), Expect = 0.0
Identities = 638/640 (99%), Gaps = 1/640 (0%)
Strand = Plus / Plus
Query: 5 gaattcctaaagccctgggtgtccactggcccccaggctagaatcaggacctgaactttc 64
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattcctaaagccctgggtgtccactggcccc-aggctagaatcaggacctgaactttc 263
Query: 65 tgctgcgaaggcaggaagaacatttggttgaggctctggaggttaaaatagacttcagag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgctgcgaaggcaggaagaacatttggttgaggctctggaggttaaaatagacttcagag 323
Query: 125 caagtagggggagcatcaggattcagagaagcagctaacagccagatccaccatggcaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caagtagggggagcatcaggattcagagaagcagctaacagccagatccaccatggcaca 383
Query: 185 gatgcttgctaatgcacgaggtacatttctgtctctcctatcaacaagagatgttcctaa 244
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 gatgcttgctaatgcacgaggtacatttctgtctctcctaccaacaagagatgttcctaa 443
Query: 245 gggcactggctttctccagtccatgctttactctgtcacccatatagaggctggaacagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggcactggctttctccagtccatgctttactctgtcacccatatagaggctggaacagg 503
Query: 305 gcagatacacaatgaatgttttcttaaaatggcagagcagcctgtacccatccatgacac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcagatacacaatgaatgttttcttaaaatggcagagcagcctgtacccatccatgacac 563
Query: 365 aagaagcttcagcccattattgctgcattccctgaggagaaaatgaagaagttcatttgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagaagcttcagcccattattgctgcattccctgaggagaaaatgaagaagttcatttgg 623
Query: 425 cttttaagctactcacagatgtcctaacaccatttctgattggagtccagttgagaatgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttttaagctactcacagatgtcctaacaccatttctgattggagtccagttgagaatgt 683
Query: 485 ccatcactgagtaaagtccccctcagcctcagcctcagcctcatcactcttatgccttgc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ccatcactgagtaaagtccccctcagcctcagcctcagcctcatcactcttatgccttgc 743
Query: 545 tgggtccctggaacatcactgtgattggtgaacagttgcagtatgaagatgctcacgata 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgggtccctggaacatcactgtgattggtgaacagttgcagtatgaagatgctcacgata 803
Query: 605 tcattcctgtaggaagctaatggctatgttttaaatgggg 644
||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tcattcctgtaggaagctaatggctatgttttaaatgggg 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1043
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1033
Effective search space: 654922
Effective search space used: 654922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_p22.g1 MSMg01no054_p22.g1 CHROMAT_FILE:
MSMg01no054_p22.g1 PHD_FILE: MSMg01no054_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:18 2005
(618 letters)
>mm_chr1_178524654_178525671
Length = 1018
Score = 1079 bits (558), Expect = 0.0
Identities = 603/618 (97%)
Strand = Plus / Minus
Query: 1 ctgttatgactcctttgtgactccaaggccagtgtcttccagttccctagggaagacagc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ctgttatgactcctttgtgactccaaggccagtgtcttccagttccctagggaagacagt 759
Query: 61 agtgagcatttcccattgagtattctcttgctggctttgaaatgagtaacataagcctct 120
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 758 agtgagcatttcccattgagtattctcctgctggctttgaaatgagtaatgtaagcctct 699
Query: 121 agacactatgagctggattttgtccacatagtgaaagagatgagacaggaacccagcttt 180
||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 698 agacactatgagctgaattttgtccacatagcaaaagagatgggacaggaacccagcttt 639
Query: 181 tgatgggaacaccacagcccagatcagctgttcactatagccttgtgagacctgagccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tgatgggaacaccacagcccagatcagctgttcactatagccttgtgagacctgagccat 579
Query: 241 ctgagcatttccaggacttttgatatgaccagagggagtttcttaaagctaccacttgtg 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 578 ctgagcatttccaggacttttgatatgaccagagggagtttctgaaagctaccacttgtg 519
Query: 301 gtcatttgctgccaatcagccacagaacacttgagcacacagccagctttgctttgattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gtcatttgctgccaatcagccacagaacacttgagcacacagccagctttgctttgattc 459
Query: 361 atttgcaaacgtattttcaacttttgtattcatagcactgccctggtttccttagcttcc 420
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 458 atttgcaaacgtattttcaacttttgtattcatagcactgttctggtttccttagcttcc 399
Query: 421 cagtctcctttccctccctgccttgctccttgctgtccctctgaaaatttccttttgaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cagtctcctttccctccctgccttgctccttgctgtccctctgaaaatttccttttgaag 339
Query: 481 tttctcttcctagtcacactttgtccctgtatctatcagggctttctgctctgtgacagc 540
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 338 tttctcttcctagtcacactttgtccctgtatctatcagaactttctgctctgtgacagc 279
Query: 541 cagacacatggaacaatttaaggatactggcccaggagttgtaaagaagtcctaggagag 600
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 278 cagacacatggagcaatttaaggatactgacccaggagttgtaaagaagtcctaggagag 219
Query: 601 aattcacccttccttagc 618
||||||||||||||||||
Sbjct: 218 aattcacccttccttagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
