BAC Information

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BAC

Clone NameMSMg01-054P24
Chromosome1 (Build37)
Map Location 50,446,837 - 50,582,972
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627430, LOC100041981, EG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054P24.T7 (MSMg01no054_p24.b1)MSMg01-054P24.TJ (MSMg01no054_p24.g1)
ACCAG282786AG282787
length698708
length of high quality
(start - end)		662 (37 - 698)634 (75 - 708)
definitionCHROMAT_FILE: MSMg01no054_p24.b1 PHD_FILE: MSMg01no054_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:18 2005CHROMAT_FILE: MSMg01no054_p24.g1 PHD_FILE: MSMg01no054_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,582,315 - 50,582,972)(50,446,837 - 50,447,458)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGA
AATGACCGTTATCTTATTTAGATAAGGCGACACATTACAGCTTCCATCCC
TGTTCTCTTTTCTCATACAGTGAGATCTATGTAGAGACAAAATTACTCTA
TCAGATCAAGTAAGTGTCAAAGTCAAACCTCATCTTACACATTTTGCATT
TTGTATCTCCTTGAATTCATCTTTCAGCTCTGTGGAGGACATTTCAAGTG
GATTTCTGCTTATTCCTGGTTACATTGAATGATAATGCTGACTGAAATTA
TTTTCTGGAGAAAGGTTATTGTCAGGACTTGTAGTGCCTTGGAAATGCAG
TTACAGGGTTTTAAGAATTGGATTTGAAATGAATGAAATAGCTCAGAATG
TCAGTGCTCACTATTTAAACTACATTTTAATTCTAATTCATAATGAATTT
CTTATAAAGCATAGGGACACCCAACAGTAATTTTTACTCCTTTTACTTGG
TCTTTGTTTATCATGAAACCCCCACCTTCAATTAATGAAATGGGAACTTG
GTAATTCTTTCTTTAGTCTTCATTTAATTATTCAAGTAGAGGTGAACATA
GAAATTGAAAGTCATTCTTAGTCAAATAACCATTTAACTATCTTCAGTTA
AAATGAAAAGAAGTGAATACTTGAAAATTACAGAAGGACTGACTATAT

GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTGATGTACTTTGGAGCAGAT
TATCTCCATTAAAAATGCCTGCATGTTAGAGCTTGAAGTAGGATGAGCGT
TTGCATAAACTTAGCACCTTGAATTTGAGTGGCTGGCCTCTAACAGATTC
ACTGATCATCCTTTAGAGCAAGAAGACAAGAACGTGTTCTTTCCCTGAGA
CCGAAAGGGGGGCTTTAAAGTGTGAAAGCCTTTACTATCACATGCTTATT
CATACTTTGGACCACTAGAGATACTTAGAGAAGATCATCTTCACTATATC
CAGAAGAAAAAATAATAAACCTGTGGTAATGGCTTTAATTAGCACATGAA
ACATCCTGCAGAAAGAACGTGAGATTCCAAATTAAAGGATAAGAATTCAA
TTCAGGTTCTGACATTTACAAATGAGGCTATCTCAACAGGTAGCCTTATA
TCTCTCAAGGTTATTTTCCTCTTGAATTAAAATCTATGGAAGCTTATTGA
AATTAAATCAGGATTTCATAGTCTATACCCATCTTATCCTCTCAAAATAG
TTTAGTAAGATAGTATTTAACAAAGCACTTATATTCAGTAAAGATTTTAG
ACTACTTTACAATCTTAAGGAAAATGACAGACACACACACATCTATATAT
ATATGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_p24.b1 MSMg01no054_p24.b1 CHROMAT_FILE:
MSMg01no054_p24.b1 PHD_FILE: MSMg01no054_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:18 2005
         (662 letters)



>mm_chr1_50582111_50583172
          Length = 1062

 Score = 1257 bits (650), Expect = 0.0
 Identities = 656/658 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagaaatgaccgttatcttatttagataaggcgacacattacagcttccatccc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaattccagaaatgacagttatcttatttagataaggcgacacattacagcttccatccc 803

                                                                       
Query: 65  tgttctcttttctcatacagtgagatctatgtagagacaaaattactctatcagatcaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tgttctcttttctcatacagtgagatctatgtagagacaaaattactctatcagatcaag 743

                                                                       
Query: 125 taagtgtcaaagtcaaacctcatcttacacattttgcattttgtatctccttgaattcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 taagtgtcaaagtcaaacctcatcttacacattttgcattttgtatctccttgaattcat 683

                                                                       
Query: 185 ctttcagctctgtggaggacatttcaagtggatttctgcttattcctggttacattgaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctttcagctctgtggaggacatttcaagtggatttctgcttattcctggttacattgaat 623

                                                                       
Query: 245 gataatgctgactgaaattattttctggagaaaggttattgtcaggacttgtagtgcctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gataatgctgactgaaattattttctggagaaaggttattgtcaggacttgtagtgcctt 563

                                                                       
Query: 305 ggaaatgcagttacagggttttaagaattggatttgaaatgaatgaaatagctcagaatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggaaatgcagttacagggttttaagaattggatttgaaatgaatgaaatagctcagaatg 503

                                                                       
Query: 365 tcagtgctcactatttaaactacattttaattctaattcataatgaatttcttataaagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcagtgctcactatttaaactacattttaattctaattcataatgaatttcttataaagc 443

                                                                       
Query: 425 atagggacacccaacagtaatttttactccttttacttggtctttgtttatcatgaaacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atagggacacccaacagtaatttttactccttttacttggtctttgtttatcatgaaacc 383

                                                                       
Query: 485 cccaccttcaattaatgaaatgggaacttggtaattctttctttagtcttcatttaatta 544
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 382 cccaccttcaattaatgaaatgggaacttggtaatcctttctttagtcttcatttaatta 323

                                                                       
Query: 545 ttcaagtagaggtgaacatagaaattgaaagtcattcttagtcaaataaccatttaacta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttcaagtagaggtgaacatagaaattgaaagtcattcttagtcaaataaccatttaacta 263

                                                                     
Query: 605 tcttcagttaaaatgaaaagaagtgaatacttgaaaattacagaaggactgactatat 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcttcagttaaaatgaaaagaagtgaatacttgaaaattacagaaggactgactatat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no054_p24.g1 MSMg01no054_p24.g1 CHROMAT_FILE:
MSMg01no054_p24.g1 PHD_FILE: MSMg01no054_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:18 2005
         (634 letters)



>mm_chr1_50446637_50447670
          Length = 1034

 Score = 1133 bits (586), Expect = 0.0
 Identities = 613/622 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatctgatgtactttggagcagattatctccattaaaaatgcctgcatgttagagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgatctgatgtactttggagcagattatctccattaaaaatgcctgcatgttagagctt 260

                                                                       
Query: 61  gaagtaggatgagcgtttgcataaacttagcaccttgaatttgagtggctggcctctaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtaggatgagcgtttgcataaacttagcaccttgaatttgagtggctggcctctaac 320

                                                                       
Query: 121 agattcactgatcatcctttagagcaagaagacaagaacgtgttctttccctgagaccga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agattcactgatcatcctttagagcaagaagacaagaacgtgttctttccctgagaccga 380

                                                                       
Query: 181 aaggggggctttaaagtgtgaaagcctttactatcacatgcttattcatactttggacca 240
           |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 aaggggtgctttaaagtgtgaaagcctttactatcacatgcttatttatactttggacca 440

                                                                       
Query: 241 ctagagatacttagagaagatcatcttcactatatccagaagaaaaaataataaacctgt 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagagatacttagagcagatcatcttcactatatccagaagaaaaaataataaacctgt 500

                                                                       
Query: 301 ggtaatggctttaattagcacatgaaacatcctgcagaaagaacgtgagattccaaatta 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ggtaatggctttaattagcacatgaaacatcctgcagaaagaacttgagattccaaatta 560

                                                                       
Query: 361 aaggataagaattcaattcaggttctgacatttacaaatgaggctatctcaacaggtagc 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagcataagaattcaattcaggttctgacatttacaaatgaggctatctcaacaggtagc 620

                                                                       
Query: 421 cttatatctctcaaggttattttcctcttgaattaaaatctatggaagcttattgaaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttatatctctcaaggttattttcctcttgaattaaaatctatggaagcttattgaaatt 680

                                                                       
Query: 481 aaatcaggatttcatagtctatacccatcttatcctctcaaaatagtttagtaagatagt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 aaatcaggatttcatagtctatacccatcttatcctctcaaaatagtttagtaaaatagt 740

                                                                       
Query: 541 atttaacaaagcacttatattcagtaaagattttagactactttacaatcttaaggaaaa 600
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 741 gtttaacaaagcacttatattcagttaagattttagactactttacaatcttaaggaaaa 800

                                 
Query: 601 tgacagacacacacacatctat 622
           ||||| ||||||||||||||||
Sbjct: 801 tgacacacacacacacatctat 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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