Query= MSMg01no055_c21.b1 MSMg01no055_c21.b1 CHROMAT_FILE:
MSMg01no055_c21.b1 PHD_FILE: MSMg01no055_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:31 2005
(543 letters)
>mm_chr1_79242438_79243381
Length = 944
Score = 907 bits (469), Expect = 0.0
Identities = 523/541 (96%), Gaps = 1/541 (0%)
Strand = Plus / Minus
Query: 4 ggaattcattttctgacctatgctttttaatcttgaagcaaaaatctaaacagaatccac 63
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ggaattcattttcagatttatgctttttaatcttgaagcaaaaatctaaacagaatccac 685
Query: 64 agaaatgtgcctctctactatgagcctgtaggcaaggggggtgatgtagcagctttgcag 123
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 684 agaaatgtgcctttctactatgagcctgtaggcaaggggagtgatgtagcagctttgcag 625
Query: 124 cattaagatatccacacctataataaaactgtggaaatactaaaagagtacatctcaaag 183
|| |||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 624 cactaagatttccacacttataatgaaactgtggaaatactaaaagagtacatctcaaag 565
Query: 184 aaccatctgagactacctggagccctcatcctggcaaagacacctctactgaatcttcct 243
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 564 aaccatctgacactacctggagccctcatcctggcaaggacacctctactgaatcttcct 505
Query: 244 aggtttggagaaatctttactgtcacctacactgatctcatggaactcctaatcagattt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggtttggagaaatctttactgtcacctacactgatctcatggaactcctaatcagattt 445
Query: 304 ctttttagaacaagttaaattgg-aaaaaacatactacctggctttgaatgttgtattcc 362
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 444 ctttttagaacaagttaaattggaaaaaaaaatactacctggctttgaatgttgtattcc 385
Query: 363 ctatcctaattcgcttggaagcaagtctaagagagatttctaagaagaaagtgaaggcat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctatcctaattcgcttggaagcaagtctaagagagatttctaagaagaaagtgaaggcat 325
Query: 423 attctgaaacatcattccaaaatgagagggaaaaaagcaccacagtgcttagactcaaca 482
|||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 324 attctgaagcatcattccaaaatgagagggaaaaaagcaccacagtacctagactcaaca 265
Query: 483 gtgcctgaatcctagaggggtttctgcaggacttctgtagactaagtagattatttagat 542
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 264 gtgcctgaatcctagaggggtttctgcaggactcctgttgactaagtagattatttagat 205
Query: 543 a 543
|
Sbjct: 204 a 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space: 497822
Effective search space used: 497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_c21.g1 MSMg01no055_c21.g1 CHROMAT_FILE:
MSMg01no055_c21.g1 PHD_FILE: MSMg01no055_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:31 2005
(598 letters)
>mm_chr1_79115195_79116192
Length = 998
Score = 1058 bits (547), Expect = 0.0
Identities = 583/595 (97%)
Strand = Plus / Plus
Query: 1 ttgagtcatcatcatccttacgtgattaacataaagaatcaccaaattacttgacacagt 60
|||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ttgattcatcatcatccttacatgattaacataaagaaccaccaaattacttgacacagt 260
Query: 61 gactgtgacatttagcattgccatttaacaagctttaataaactcaatatcataattaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgtgacatttagcattgccatttaacaagctttaataaactcaatatcataattaat 320
Query: 121 gaaaactacgactacacctactcttatgacacgtgtgtgtctaagacattcctaaatgtg 180
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 321 gaaaactaagactacacctactcttatgacacatgtgtgtctaagacattcctaaatctg 380
Query: 181 taaatccttcacatgtgggtgttccaggggctagaatggagctgtcaggtgtgaagtaaa 240
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 taaatccttcacaggtgggtgttccaggggctagaatggagctgttaggtgtgaagtaaa 440
Query: 241 cgttacaacaaatttctctttattcattttttaaagaatccttcaaaattggccagaact 300
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 cattacaacaaatttctctttattcattttttaaagaatccttcaagattggccagaact 500
Query: 301 tgactgtgtttttctattatttaagtccttaatgcctggtgggatttgtattgtttaagt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tgactgtgtttttctattatttaagtccttaatgcctggtgggatttgtattatttaagt 560
Query: 361 cctaaatgcctattaagatttcttagccattagaaacttatggatatgaacctattatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctaaatgcctattaagatttcttagccattagaaacttatggatatgaacctattatat 620
Query: 421 agatatagacatgctagtcctggaaaagtatcaatgtagtctatccagtctacttctttt 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 agatatagacatgctagtcctggaaaagtatcaatgtagactatccagtctacttctttt 680
Query: 481 caggctaccttaagatagttattataactcagggtccaagattcaaatgttcaaatcatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caggctaccttaagatagttattataactcagggtccaagattcaaatgttcaaatcatt 740
Query: 541 cccacttttctaattttcttcatgtcctaacatactgcaaatcagtagattctaa 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cccacttttctaattttcttcatgtcctaacatactgcaaatcagtagattctaa 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
