BAC Information

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BAC

Clone NameMSMg01-055H22
Chromosome1 (Build37)
Map Location 27,861,555 - 27,861,848
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677427, LOC100040952
Downstream geneEG433281, EG665903, Gm597, LOC435614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055H22.T7 (MSMg01no055_h22.b1)MSMg01-055H22.TJ (MSMg01no055_h22.g1)
ACCAG283150AG283151
length697832
length of high quality
(start - end)
294 (68 - 361)---
definitionCHROMAT_FILE: MSMg01no055_h22.b1 PHD_FILE: MSMg01no055_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:54 2005CHROMAT_FILE: MSMg01no055_h22.g1 PHD_FILE: MSMg01no055_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCCCTGGTTCCCGTTATTATTTGCACAATATATATTTGATGGTATAAA
AAGGTGTGATTTGCATAGTACTTTCAAAAGCATGTTCTGTTTTCCTACTA
AAACTATCAAAAATTATCTCACACTAGTGCATTCTCACAATAAAATTTTA
ATCAGGTCTTCATGAAATCTTAGAAGAACTAGAGTTAAAATATGGTAGCT
TTCAGGATCATGCAGGTATTATTCACATAGTAAAAGAGGACTAAATATTG
GAAATGATGTGGAAATTTTGGCACCTTGCTTTAAGTAACATGAAGGCTGA
CAGAGCATACTAAACAGGCTGTCGAACGTTTGACTATGGTCTACACAAAT
CTTGCACGCAAGACTTTTTAAAAATAAATACATGTATAGGTGTTGGACTC
AATCCCCAAATATCATGTAATGAAATTTATTACAATGATAAAAACATGTG
AAAATGGCCATAGGAAAAATACAGTTGATCATTTTATAAGCATTTATATC
TTACTATCAACTGCCTTCATACTATATATTCAAATCTTACAAAGTAACCG
TTGAAAATATTAACATTTGACATATTTGTTCTGAGATGAATATGTTCTGA
CTTCAAAGTTTTAAAAAATATTTCACTATTAAATGACTTGTGGAAAT
CGATGATANTGNTANGCCTGNCGGCCGCCTGGCTTTCAAATTTAGGNGAA
CTATAGAANGATTTCCAAAAATACTCCTAGTCACTCCCATTCTCGGGGTG
AAAAACCCNNNTGATGNNCAAGCAACGAATCGNTAGCTGNCATGCCATAC
CANGTAGTTGAAAGTCAAGCTGTGGTTTAAAAAACANCNCCATTTTCCAG
GTTCGGAAATTTTCTTAAGAAGTAAGCTAGGAGGGGGGTGGGGGGGGAGG
GAGCGGGGGGGGGGGGGGAAGCGGAGAGGGGGAGGGGGGGGGGGGGGGGG
TGGGGGGGGGGGGGGGGNTCTAAAAAAATTTTTTTAAAAAAACTTTTCAA
ACTTTTTTTTCTCTTTTTTTTTTTTTTTTAAAACCCCCTTTTTTATAAAA
AATTTTTNNCNTTTTTATTAACCCCATCTTTCCCTATTTTTTATTTATAT
TAATCTTTTTTTGTTTTTTTTTCTGATGTTGTTGTTGGTGGGGGTGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAAANNNNCNCNNNNNNNNNN
NANNNNCNNNTTNNCCCTTCCTACACTTTCTTTTTTTTATATAGGGGGCA
CCTTTCCTTTTTTTCCCCCTCCTTTTCTTTCCTTCCCCACTTCCCCTTTT
TTAAAACTATTTTTTTTTCTTTTTTTCCCCCCATCCTTTCTTCCCCAACT
CCACCCCTATATCANTTTCNTTTTTCCCCCTCTTCCCCCTCTACTCCTTT
TCTTTTTTTCCCCTTTATTTTAACACCCCCCANTTTTCCCTTCTCTCCTC
TTTTTTTCTTTTCCCTTTATTTTTGTAATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_h22.b1 MSMg01no055_h22.b1 CHROMAT_FILE:
MSMg01no055_h22.b1 PHD_FILE: MSMg01no055_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:54 2005
         (294 letters)



>mm_chr1_27861355_27862048
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatttgcacaatatatatttgatggtataaaaaggtgtgatttgcatagtactttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 attatttgcacaatatatatttgatggtataaaaaggtgtgatttgcatagtagtttcaa 260

                                                                       
Query: 61  aagcatgttctgttttcctactaaaactatcaaaaattatctcacactagtgcattctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcatgttctgttttcctactaaaactatcaaaaattatctcacactagtgcattctca 320

                                                                       
Query: 121 caataaaattttaatcaggtcttcatgaaatcttagaagaactagagttaaaatatggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caataaaattttaatcaggtcttcatgaaatcttagaagaactagagttaaaatatggta 380

                                                                       
Query: 181 gctttcaggatcatgcaggtattattcacatagtaaaagaggactaaatattggaaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctttcaggatcatgcaggtattattcacatagtaaaagaggactaaatattggaaatga 440

                                                                 
Query: 241 tgtggaaattttggcaccttgctttaagtaacatgaaggctgacagagcatact 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtggaaattttggcaccttgctttaagtaacatgaaggctgacagagcatact 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)