BAC Information

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BAC

Clone NameMSMg01-055M13
Chromosome1 (Build37)
Map Location 11,660,230 - 11,660,510
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneCpa6, LOC433271, C030045D06Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055M13.T7 (MSMg01no055_m13.b1)MSMg01-055M13.TJ (MSMg01no055_m13.g1)
ACCAG283359AG283360
length706738
length of high quality
(start - end)
287 (68 - 354)438 (76 - 513)
definitionCHROMAT_FILE: MSMg01no055_m13.b1 PHD_FILE: MSMg01no055_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:17 2005CHROMAT_FILE: MSMg01no055_m13.g1 PHD_FILE: MSMg01no055_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGACGAGACCGCGGAATT
CTCCATTCGCTTAAAACAACTCCATTTTAAAACAAACAAAATCATGTTTG
TAAAACAGCTAGTGAGCTCCAAAGCCACAGGAGAAGAGCTACAACTAAAT
CTGTACTCTTCATGAAATTCTTTAAGCTCCATAACAATTCAACTCATGTT
TATTATTTTAACATGCCAAATATTCCGTTTTAAGCAGCACCAGCTAGATT
TTAAACTAAAGGGGAAGGGAAAAGAGAAAAGTATCAAGACCAGAGGAAGT
TGTAGCCATGATTTATTTTAAGAACTCTGTTTTAAACAGTCTCTTTCTTT
TTATTGTTCTGTATACCTCTCCCAAGTAGTACACTGCACCTGCCAGGCCT
GTGCCCTTGATCCCAGTTGAAGAAAATACCTGATGAGTTCCAGTTGTTCC
CTTTGTCATGCTTTAGTTTTCCTATGTGGTTAGTACCTAAGAGAAGGGGT
GTGAAAGAAATAGACACATGTGGGTTTAAATAGTTTTAATATACCCATGG
GCATGTGAGTTTGCATATATATGGGAAGGCTTTCCTGAGAAAGATATACA
TCTTCATTGTTGGGATAAAACATTTAAAGCAATTGCCCTCCTGATGATAG
TAGACCCCAACAATTTGGGATGCTTTGCCTCTTACTTGCATTCCATGTTT
ACCCCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATTTATACTTCCTCCAAATATCAT
GGGTACTCCATGGGTCTTGACTCAGCATGTGAGTCTGACTTAGAAAAACT
CCATGTGAGCCTTTATCAACTGACATCACTCTGCCAATAACCCTGAGTCT
GTGGAAATAGCAAGAGGCCATGGCATGCCACCAGAAATTTTTTGGTGTGT
TTCTGTTTAAAGAGTCCCAATAAACAGAGCTGAGCTAATGCTATGCAAAG
TAATGGTGGACTAATACATGTGTGTCACTAGCAAAGAACCCTTCATCACA
TGCCATTTCACATGCTTGCTTTAGCAGAACATCCTTTCACCTGTGTCTGC
TTCAGAGAAATATTCCTTCACATGTTTGTCCTAGCAAAACACCATCCAAC
ACAACTGTCTTTCCAAAGAACCCTTAAGTTTCCACTTTATCAGTGATAAT
TGATGTCAAGAATAGTGGTTCTAAAGGATAAGAATAAGAATAGGAATAAG
AAGGATAAGTGTGGCATGAGAAACGAAGCTCCTCACAATTGAATCAAGAA
AGCCTTACATCTATGGTTTGTGTAAGTTTAAAGAAGTCGTTCATGTTTCA
CCCATGCTGTCCGAAGGACAAGAGAAATTGTACCAAGGCCTAGACCACTT
CTGTGGCTAATGACGAGGAGCACGGAACAGTGTGTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_m13.b1 MSMg01no055_m13.b1 CHROMAT_FILE:
MSMg01no055_m13.b1 PHD_FILE: MSMg01no055_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:17 2005
         (287 letters)



>mm_chr1_11660030_11660711
          Length = 682

 Score =  507 bits (262), Expect = e-148
 Identities = 278/286 (97%), Gaps = 5/286 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactccattttaaaacaaacaaaatcatgtttgtaaaacagctagtgagctccaaagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||
Sbjct: 481 aactccattttaaaacaaacaaaatcatgtttgtaaaacagctagtgagcaacagagcca 422

                                                                       
Query: 61  caggagaagagctacaactaaatctgtactcttcatgaaattctttaagctccataacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caggagaagagctacaactaaatctgtactcttcatgaaattctttaagctccataacaa 362

                                                                       
Query: 121 ttcaactcatgtttattattttaacatgccaaatattccgttttaagcagcaccagctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttcaactcatgtttattattttaacatgccaaatattccgttttaagcagcaccagctag 302

                                                                       
Query: 181 attttaaactaaaggggaagggaaaagagaaaagtatcaagaccagaggaagttgtagcc 240
           |||||||||||||||||||||||||||||||||||||||     ||||||||||||||||
Sbjct: 301 attttaaactaaaggggaagggaaaagagaaaagtatca-----agaggaagttgtagcc 247

                                                         
Query: 241 atgatttattttaagaactctgttttaaacagtctctttcttttta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atgatttattttaagaactctgttttaaacagtctctttcttttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 682
Length adjustment: 9
Effective length of query: 278
Effective length of database: 673
Effective search space:   187094
Effective search space used:   187094
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)