BAC Information

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BAC

Clone NameMSMg01-055N14
Chromosome1 (Build37)
Map Location 72,918,381 - 72,934,535
singlet/doubletdoublet
Overlap geneIgfbp5
Upstream geneEG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2
Downstream geneLOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055N14.T7 (MSMg01no055_n14.b1)MSMg01-055N14.TJ (MSMg01no055_n14.g1)
ACCAG283406AG283407
length706778
length of high quality
(start - end)		662 (42 - 703)335 (77 - 411)
definitionCHROMAT_FILE: MSMg01no055_n14.b1 PHD_FILE: MSMg01no055_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:22 2005CHROMAT_FILE: MSMg01no055_n14.g1 PHD_FILE: MSMg01no055_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,918,381 - 72,919,038)(72,934,203 - 72,934,535)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTAAAGCGATCTGGCGCGGGACAAAAATATGGTTCGTACGTGTGTGCATG
TATGCGTGCACGCGCGCGTGTGCACTGGGTCCACTTGGGAAGTAGGATGC
TGCCTCTTTGCTGGTCCAGCATCTGCGTGCGTGAGTGCGCACAGAGCTCA
CTCCTTTTATTCCTAGCTACTACCTATCTACCGCTTGGCTGGGCAAATAA
AAGTGGGGCCAGGATACTGCGGAGTCATAACTTGCGCAATTCGGCTGTGA
TGGGATTGCTAGCCAACCTTTTTGTCTCCAAGCCAGGTGATGGATTCCTA
CGGCTTCAGCAGGCAAAAATGTAATAGAAATAACCTAAAAAATCGGTCTC
TGGGGGCTTCCGCGGTTTGTACGTCCCCAACCCCCTCATTATGCAACTTC
TCACGATAGCTCAAACTTGCAATTTCCGGGGAGAGAGGCTGAGCTCACGC
AAGCTCTGCTATCTACTGATGGGCACTCACGTACCCTCCTACGTGGTGGA
ATCCATAGGTCTTTAGCTTGCGTTCAGAAAAATTACAAACCTCCTCACGT
TGGAGTAATGGAGGACGACAGGTGGTGAGAAGGGCTTTATCTTTGTAAGG
AACCGCACCAAATAAACATTTAGCTAAGTCTTAACATCTCTCCTAGCTCA
GATTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTAACCATCCAAGTATTGTTGG
GCATACAATGTCTCATGACTTCTCAAGAGGATAGGATAAAGACCCAAAAC
AACAGTGTCTTACATGAACAAGATATGGCTTAAAACTTGCAAGTCAGGTT
ATGAGCACAGCGAGCATAGTTCATTGGTAGAGCATTTTTCTGGCATGACC
AAGGCCATGGGTTCCATCCTGAGCACCACAGGAATACAAATGAGGAGCCA
GGCATATGTCTCAGTGATAAAGTGTGTGTTGGCTTAGGGTTAGGGCTCTC
GCCTACTATGCATGAGACCTTTGATTCAACATCCAGTATTGGGGGGGGGG
GGGGAATGANNTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNG
TNNNNNTNNTTTCCCNTTTTTTTTCTCTCTCCTCTTTCTTCCCCCTCCCC
TCTTTTTCTCTTCCTCCTCTTCTCTTTCCTCTTCCCCCCCTCCTCTCCTT
TTCTTTCCCCCCTTTTTTTTTCCCTCCTTCTCTCCCCTTTTTTTCCCTTT
CCCTCTCCCTTCTTTCCCCCCTTCTTTTTTTCCCCCCCCCCCCCCTTCTT
CTTTTTCTTCTTTCCCCCTCCTTCCGCCTCTTTTCCTCTTTCCGTTTTCG
GCCCTCCTTTTTCCCCCCCCCCCCCTTTTTCCTCTCTCCCCTATTTCTTT
TCTTTCCCCTTTTTTTCCCCTCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_n14.b1 MSMg01no055_n14.b1 CHROMAT_FILE:
MSMg01no055_n14.b1 PHD_FILE: MSMg01no055_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:22 2005
         (662 letters)



>mm_chr1_72918177_72919238
          Length = 1062

 Score = 1234 bits (638), Expect = 0.0
 Identities = 653/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaagcgatctggcgcgggacaaaaatatggttcgtacgtgtgtgcatgtatgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaagcgatctggcgcgggacaaaaatatggttcgtacgtgtgtgcatgtatgc 264

                                                                       
Query: 65  gtgcacgcgcgcgtgtgcactgggtccacttgggaagtaggatgctgcctctttgctggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgcacgcgcgcgtgtgcactgggtccacttgggaagtaggatgctgcctctttgctggt 324

                                                                       
Query: 125 ccagcatctgcgtgcgtgagtgcgcacagagctcactccttttattcctagctactacct 184
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 ccagcatctgcgtgagtgagtgcgcacagagctcactccttttattcctagctactccct 384

                                                                       
Query: 185 atctaccgcttggctgggcaaataaaagtggggccaggatactgcggagtcataacttgc 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 atctaccgcttggctgggcaaataaaagtggggcgaggatactgcggagtcataacttgc 444

                                                                       
Query: 245 gcaattcggctgtgatgggattgctagccaacctttttgtctccaagccaggtgatggat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaattcggctgtgatgggattgctagccaacctttttgtctccaagccaggtgatggat 504

                                                                       
Query: 305 tcctacggcttcagcaggcaaaaatgtaatagaaataacctaaaaaatcggtctctgggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcctacggcttcagcaggcaaaaatgtaatagaaataacctaaaaaatcggtctctgggg 564

                                                                       
Query: 365 gcttccgcggtttgtacgtccccaaccccctcattatgcaacttctcacgatagctcaaa 424
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcttccgcggtttgtatgcccccaaccccctcattatgcaacttctcacgatagctcaaa 624

                                                                       
Query: 425 cttgcaatttccggggagagaggctgagctcacgcaagctctgctatctactgatgggca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttgcaatttccggggagagaggctgagctcacgcaagctctgctatctactgatgggca 684

                                                                       
Query: 485 ctcacgtaccctcctacgtggtggaatccataggtctttagcttgcgttcagaaaaatta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctcacgtaccctcctacgtggtggaatccataggtctttagcttgcgttcagaaaaatta 744

                                                                       
Query: 545 caaacctcctcacgttggagtaatggaggacgacaggtggtgagaagggctttatctttg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caaacctcctcacgttggagtaatggaggacgacaggtggtgagaagggctttatctttg 804

                                                                     
Query: 605 taaggaaccgcaccaaataaacatttagctaagtcttaacatctctcctagctcagat 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taaggaaccgcaccaaataaacatttagctaagtcttaacatctctcctagctcagat 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no055_n14.g1 MSMg01no055_n14.g1 CHROMAT_FILE:
MSMg01no055_n14.g1 PHD_FILE: MSMg01no055_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:22 2005
         (335 letters)



>mm_chr1_72934196_72934930
          Length = 735

 Score =  582 bits (301), Expect = e-170
 Identities = 325/333 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttaaccatccaagtattgttgggcatacaatgtctcatgacttctcaagaggatagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acttaaccatccaagtattgttgggcatacaatgtctcatgacttctcaagaggatagga 281

                                                                       
Query: 61  taaagacccaaaacaacagtgtcttacatgaacaagatatggcttaaaacttgcaagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 taaagacccaaaacaacagtgtcttacatgaacaagatatggcttaaaacttgcaagtca 221

                                                                       
Query: 121 ggttatgagcacagcgagcatagttcattggtagagcatttttctggcatgaccaaggcc 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 220 ggttatgagcacagcgagcatagttcattggtatagcatttttctggcatgaccaaggcc 161

                                                                       
Query: 181 atgggttccatcctgagcaccacaggaatacaaatgaggagccaggcatatgtctcagtg 240
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 160 atgggttccatcctgagcaccacaggaatacaaatgaggagccaggtatatggctcagtg 101

                                                                       
Query: 241 ataaagtgtgtgttggcttagggttagggctctcgcctactatgcatgagacctttgatt 300
           |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct: 100 ataaagtgcgtgttggcttagggttagggctctcgcctactatgtatgagacccttggtt 41

                                            
Query: 301 caacatccagtattggggggggggggggaatga 333
           ||||||||||||||||||||||||| |||||||
Sbjct: 40  caacatccagtattgggggggggggaggaatga 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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