Query= MSMg01no056_d09.b1 MSMg01no056_d09.b1 CHROMAT_FILE:
MSMg01no056_d09.b1 PHD_FILE: MSMg01no056_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:49 2005
(282 letters)
>mm_chr1_57895845_57896528
Length = 684
Score = 478 bits (247), Expect = e-139
Identities = 272/281 (96%), Gaps = 2/281 (0%)
Strand = Plus / Plus
Query: 1 cctgaagttggttaccctcaggctgtaagtaccactactgtgcctttcaccatatttaag 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cctgaagttggttaccctcaggctgtaagtaccactactgtgcctttcagaatatttaag 260
Query: 61 cagcattttgaacaaagataaagatatagggttaatgaacaagaaataggtgatcccttc 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcattttgaacaaagttaaagatatagggttaatgaacaagaaataggtgatcccttc 320
Query: 121 aaaagaaatacctacaggtctgatgagaagaaacgtattacattaaaaataacttaagga 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagaaatacctacaggtatgatgagaagaaacgtattacattaaaaataacttaagga 380
Query: 181 tttatattttccagttccaagatcctttattatccgaatgactct--actagaatataag 238
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tttatattttccagttccaagatcctttattatccgaatgactctgtactagaatataag 440
Query: 239 aagcatacttattataagctgagtttgggaagagtgttggg 279
||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 441 aagcatacttaagataagctgagtttgggaagagtgctggg 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 684
Length adjustment: 9
Effective length of query: 273
Effective length of database: 675
Effective search space: 184275
Effective search space used: 184275
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no056_d09.g1 MSMg01no056_d09.g1 CHROMAT_FILE:
MSMg01no056_d09.g1 PHD_FILE: MSMg01no056_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:49 2005
(244 letters)
>mm_chr1_58000757_58001400
Length = 644
Score = 447 bits (231), Expect = e-130
Identities = 240/243 (98%)
Strand = Plus / Minus
Query: 1 caggacctcatatcctggggtatgttcctgaagggagagtgctgaccctgggtgggcatc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 443 caggacctcatatcctggggtatgttcctgaagggagagtgctgatcctgggtgggcatc 384
Query: 61 tcaccgacctcactcaccccctcaatgtgtaggaaagataatgatgtgggactcctaaca 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcaccgacctcactcacccccccaatgtgtaggaaagataatgatgtgggactcctaaca 324
Query: 121 gttactctgaggcacagagcccttctggctggtcttcgctgctttgtttaggtatggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gttactctgaggcacagagcccttctggctggtcttcgctgctttgtttaggtatggaag 264
Query: 181 ggcactactgcttacattagccgccacctgaacgctggaatcactgagctgaatggactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 263 ggcactactgcttacattagccgccacctgaacgctggaatcactgagctgaaaggactg 204
Query: 241 tac 243
|||
Sbjct: 203 tac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
