BAC Information

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BAC

Clone NameMSMg01-056H17
Chromosome1 (Build37)
Map Location 56,359,243 - 56,359,533
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056H17.T7 (MSMg01no056_h17.b1)MSMg01-056H17.TJ (MSMg01no056_h17.g1)
ACCAG283882AG283883
length719712
length of high quality
(start - end)
242 (78 - 319)291 (70 - 360)
definitionCHROMAT_FILE: MSMg01no056_h17.b1 PHD_FILE: MSMg01no056_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:09 2005CHROMAT_FILE: MSMg01no056_h17.g1 PHD_FILE: MSMg01no056_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAAAGCCGCGGAA
TTCTTCACACTTACCTAAGAATGGAGACAAAATGTATTATAGTTCCTCTA
AGCCAGTGGTTCTCAGCCTATGGCTCATGACCCTTTTGGGGTCCTCAAAT
GAGATGTCCTATGTATCAGTTATTTACATTAAGATTTATAACAGTAGCAG
AGTTACACTTATGAAGTAGCAATGAAAATAATTTATGATTGGGGTCATGG
CAACATTCAGGCCAAGAACCACAGCTAAACTCTTCTTGGTGCTCGGGAAT
GCGGGAGTTTCTAAGTGATATGTTTACTAAGTAAGGCTCCATTGTATTGT
CTATTAGATGTTTGTTTGCCCCCCCCCCCCCCCCAAACTGAAGGATGCTT
ACCTGAGCAGTTGGTTATATCATACAATTTAAGTGAGATGTTCTGAAGAC
TTAGTGAGTGTCTCAATGAGGCCAGTCCTTCACTCTCTTAAAACTATGAG
CACCAGCATCCACCAGAATGTGTCTTTACAGCCTCTGGAGATGGTAAGGC
CTTATTTCCTTTTGCTCACAGACCGTTTTGTATATTGAGAACCAGTTTAC
ATCCTTTTCAAAGATAATTGCTTATTATGAAGTGGCAGCTAAGTTGCTAC
TATATTCCTAGATTACCTGCACCCCTTATCTCATGTTTGTTCCTGCTACA
GTAGCGTGGGCAATACCGT
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTAACTCAGTCTGAGGCAAGGGAAAATTTA
GAAGATAGTAAAAAGCCTTGCCATCTCTAGGCAAAAACTGTCCTGGGGGT
GAGAAATAGAGGTCCCAGAGGTGACGTCTGCACCACGGAGGCTTCAGAAT
GCACACACGAGTCACTGTAAAGACTACAGGAGCACACAGCGACACATTTA
ATTTTGCTAAGTCAGTTTGCATAGCATTTCAGGATTAATGGGTAGAATGC
AGTTCATAAATGTCAGTTATAACTATAATGTTCACCCTGTGCCATAATTT
AATTCCATGAAGCTAAAGGCTAGCACATTTAGAACCAATAAAAAGAAATA
CTTCCTTCCATTGTATATTTCACCCCACTGAGACCACTGCCAAAGGGTCA
TTGACACGGGGCCAGCTCTGAGGAGGAATTTGACAGTCCTCAGATATATG
TCTGGCTAGTCAAAGCGTAGGTGATTTAAGAGTTACAAAAATCCTATGCA
GCTTAAATGGGAGTCAGGGAGGTCCTTTAACCTGTGTGCTATTTACAACT
CCAAGTGGATGAAGCACATTAGTTTTTTAAAGTAATTTATTCATTAACTT
TTTTATTTTACATCCTGATCGTGCGCCCTGTCCCTCCTCTTCTCCCAGTC
TCATTCTTAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_h17.g1 MSMg01no056_h17.g1 CHROMAT_FILE:
MSMg01no056_h17.g1 PHD_FILE: MSMg01no056_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:09 2005
         (291 letters)



>mm_chr1_56359043_56359733
          Length = 691

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaactcagtctgaggcaagggaaaatttagaagatagtaaaaagccttgccatctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 491 tctaactcagtctgaggcaagggaaaatttagaagatagtaaaaagccttgtcatctcta 432

                                                                       
Query: 61  ggcaaaaactgtcctgggggtgagaaatagaggtcccagaggtgacgtctgcaccacgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggcaaaaactgtcctgggggtgagaaatagaggtcccagaggtgacgtctgcaccacgga 372

                                                                       
Query: 121 ggcttcagaatgcacacacgagtcactgtaaagactacaggagcacacagcgacacattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggcttcagaatgcacacacgagtcactgtaaagactacaggagcacacagcgacacattt 312

                                                                       
Query: 181 aattttgctaagtcagtttgcatagcatttcaggattaatgggtagaatgcagttcataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aattttgctaagtcagtttgcatagcatttcaggattaatgggtagaatgcagttcataa 252

                                                              
Query: 241 atgtcagttataactataatgttcaccctgtgccataatttaattccatga 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atgtcagttataactataatgttcaccctgtgccataatttaattccatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)