BAC Information

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BAC

Clone NameMSMg01-056H21
Chromosome1 (Build37)
Map Location 72,765,246 - 72,869,099
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a
Downstream geneIgfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056H21.T7 (MSMg01no056_h21.b1)MSMg01-056H21.TJ (MSMg01no056_h21.g1)
ACCAG283890AG283891
length731717
length of high quality
(start - end)
286 (76 - 361)292 (71 - 362)
definitionCHROMAT_FILE: MSMg01no056_h21.b1 PHD_FILE: MSMg01no056_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:10 2005CHROMAT_FILE: MSMg01no056_h21.g1 PHD_FILE: MSMg01no056_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,868,816 - 72,869,099)(72,765,246 - 72,765,525)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTTTATTTACCGCATTAGATCAGTAATAAGTATGAAAATTATAAAG
GCAAGAGTATCCATGCTCTTCCCCAGATGACCTTGGACTCACAATCCTCC
TGCCTCGGTGTTTAGAGTGCTGAGATCACAGGCATGAACCACTGGGAATT
TCTAGAATTTCTCTTTCTGGTGAGTCGAATCAGTGCTGATCCCTTTCCCC
TTATCCCCAGTTAATAGCCAGCTTTACCCTGCACAACCCCAGATACCCAC
ACCCCAAGAGGAACCTTATCTCTTTCCTTCCCTAACCAAACAGCCTCCAA
GTCCTACTCTTTTTTTTTTTGCGCCACCCCCCGTCTGATGCCGGCACCTT
CTGTAAAACACAAGGGAAATTAGTGAAACAAAATTCACATATGTTTTGGT
TTTGGCGGTTTGGTTTGGCTTGGTTTGTCTCCCGCCCCTTCTTTCTTTCT
CCTTCCCTTCTTTATATTTTTTTACCTCTTCTCCCTCTTCTTTTTCCTCT
TTCTCTTTCTCTTCTTTCCTGTCTTTCCCTTCCTTTTCCCCGTCCCTCCG
TTTTTTTTTACCCCTCCTATTTTCTCTCTTTCTTGCCCCGCTCCTCCCTT
TCCTTTTTTCCCCCTTCTTCCTCTCCTCGCCTATTTCCTCTTTCTGTGTT
CCGCTTGGTTTCCCCTGCTCTTTTTCCCTTA
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCGAAAATCTTTCCCCCTTTTATAGATGACAAAACCTC
TAAGATTTTCTACTTGAAGACACAGTCATTGAATGGGGAAAGAATGAACT
CCACAAGGAGTTCCGTGCTTCAACTTCACCTCCCCGTTCACTGGCTTGGG
CAACAGAAGAGCTTTGTTCTCTATAGATAAAGAAACCAAGGTACAGAGTG
GTATCTGTGAGGGGTTTTGATGGTTGGAGGCCAGTCTCAGCAAGTGATAA
GTATATAACGCTAAAAGGCCATTACAGACAGGCTGGAGAGAAAGTGCCAC
TAGGATTCTGCTGATTATACCCCCCCCCCCACAAGGAGCATAGGTAGTGA
ACAGCAGGGGGAGCCCTTGCTGAGGATGAGAGAATTTGGAGGGATCAGAG
TGCTTCTCTTTCTCCCGCTCTTAACTTTGCTCGGCGTACAGGTATGACTT
CCCTGATGACAGTGGCCACAGCCACACAACAGCCCTGCTGCTTCCAAAGG
CCAGTGAGATGGGAGCCCTTTCTCCTCAGGAGCGTAGGCCAGTCAAACCC
AAGTAACTGAATGATTGAATACTGGATAAGACCTGTGCGTGTGCAAAGAA
TTGGGGTGAGGAATCCAATCTCTACCCAGGGGCCTCAGGATTCAAAATTG
CGCCTTTCTCCACGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_h21.b1 MSMg01no056_h21.b1 CHROMAT_FILE:
MSMg01no056_h21.b1 PHD_FILE: MSMg01no056_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:10 2005
         (286 letters)



>mm_chr1_72868499_72869184
          Length = 686

 Score =  503 bits (260), Expect = e-147
 Identities = 278/284 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaataagtatgaaaattataaaggcaagagtatccatgctcttccccagatgaccttg 60
           ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct: 601 agtaataagtatgaaaattataaaggcaagagtatccatgcacatcccgagatgaccttg 542

                                                                       
Query: 61  gactcacaatcctcctgcctcggtgtttagagtgctgagatcacaggcatgaaccactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gactcacaatcctcctgcctcggtgtttagagtgctgagatcacaggcatgaaccactgg 482

                                                                       
Query: 121 gaatttctagaatttctctttctggtgagtcgaatcagtgctgatccctttccccttatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaatttctagaatttctctttctggtgagtcgaatcagtgctgatccctttccccttatc 422

                                                                       
Query: 181 cccagttaatagccagctttaccctgcacaaccccagatacccacaccccaagaggaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cccagttaatagccagctttaccctgcacaaccccagatacccacaccccaagaggaacc 362

                                                       
Query: 241 ttatctctttccttccctaaccaaacagcctccaagtcctactc 284
           |||||||  |||||||||||||||||| ||||||||||||||||
Sbjct: 361 ttatctcagtccttccctaaccaaacaacctccaagtcctactc 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no056_h21.g1 MSMg01no056_h21.g1 CHROMAT_FILE:
MSMg01no056_h21.g1 PHD_FILE: MSMg01no056_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:10 2005
         (292 letters)



>mm_chr1_72765046_72765735
          Length = 690

 Score =  503 bits (260), Expect = e-147
 Identities = 276/282 (97%), Gaps = 2/282 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcccccttttatagatgacaaaacctctaagattttctacttgaagacacagtcatt 60
           |||||||||||||||||||||||||| ||||||||||||||||||||||  | |||||||
Sbjct: 201 ctttcccccttttatagatgacaaaaactctaagattttctacttgaag--agagtcatt 258

                                                                       
Query: 61  gaatggggaaagaatgaactccacaaggagttccgtgcttcaacttcacctccccgttca 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaatggggaaagaatgaagtccacaaggagttccgtgcttcaacttcacctccccgttca 318

                                                                       
Query: 121 ctggcttgggcaacagaagagctttgttctctatagataaagaaaccaaggtacagagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctggcttgggcaacagaagagctttgttctctatagataaagaaaccaaggtacagagtg 378

                                                                       
Query: 181 gtatctgtgaggggttttgatggttggaggccagtctcagcaagtgataagtatataacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtatctgtgaggggttttgatggttggaggccagtctcagcaagtgataagtatataacg 438

                                                     
Query: 241 ctaaaaggccattacagacaggctggagagaaagtgccacta 282
           ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 439 ctaaaaggccactacagacaggctggagagaaagtgccacta 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 690
Length adjustment: 9
Effective length of query: 283
Effective length of database: 681
Effective search space:   192723
Effective search space used:   192723
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)