ACAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTTTATTCCGTAATTGATTTTTAAATTGATTATTTGTTTTC
ATGATATATCGTTTCCTGAATTCTTTCTCATTTTTAGATATCATCCCTAT
TCCACATGAGTTGTTAAAAGTCTTTCATATTTTATAGACTGCTGCTTAGT
CTAAATGACTGTGTCCTTTGCCTTATAGAAGATTTTCAGTTTTATGAGAT
CCAATTTATTAACTGTTGATCCTAGTGTCTTTGCTAGATTTTCAGATTCA
AGGGGTCATATGCATTAATTTCCAATCTTAGTGTCTGTGCTTACAATGTT
CTGCTCAGAAAGTCTTCTCTTTCACAAATGAGTTCAAAGCTATCCCTCCC
TTTCCTTTCTATCAGGTACAATTTATCTGGTTTTATGATGAGGTCTTTGA
TGTGCTAATATACATAATAGCCACTTCAAATTCCATTCGCAAATTTCCAC
AGCTGATAAAAACTTTCAATATAGTAGATGGATACAAAATTAACTCAAGA
GAATTTATTCCTCCTATATACAAGTGATACATGGTGTGAAATCAAGAAAA
CCATATGTTTCACAATATCCTCAAGTAATATAAAATATGTTGGGGTAACT
GTAACCAAGCAAGTAAAAGACTTATGTAACATCAAATGCTTGAAGAAGGA
AATA

NTCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGAATGAAATAATTTGAGGCAAAT
TTTATGTTATCTAATTTATAAGATCATTATTATATATGTCATTGCTAATA
ATTATTAGATAGAATAAAATCCAGCAAGTTTAAACATTTACCAAAATAAG
GACATTTGGTTATTTCATAAATTATGTGTATATAATTATGATTCTACCAA
GTACCTAAGTTATTATCATATTAATTTTTGTTCTTCTCAAGATAGAAAAT
TTTATTGGTCTTTATCATGTAGTATTTATATTATTAAACCATGTCTAATT
TATAGAGTAAAATGAACACATTTTCTTTACTTTATTTTTTATTTTTAAAT
AATGTAAGAAATACCCATAAACTCTGAAATCAACTCTGACTATTTAAAGG
ACAATATTACTTTGTTTTTATTTTACAATATAAGCCAAAATACAACTCAA
ATAATATGATGTAAAATGTATTATACATCTTCAGACATTTAAATTTTATT
GAAAGCAATGCATTTATTATATAGACTTAAGCCCCTTTATGGACATCATT
GTAAGTGTTTTTATAAGGTTTTTGGATAATATATGTGTGTGGCATATATG
CATGTTCCCACATGTAAGCCGATATACACACACAGTATGCACATGCATG

Query= MSMg01no056_j03.g1 MSMg01no056_j03.g1 CHROMAT_FILE:
MSMg01no056_j03.g1 PHD_FILE: MSMg01no056_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:16 2005
         (541 letters)



>mm_chr1_150442815_150443755
          Length = 941

 Score =  946 bits (489), Expect = 0.0
 Identities = 501/505 (99%), Gaps = 1/505 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaatgaaataatttgaggcaaattttatgttatctaatttataagatcattattatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagaatgaaataatttgaggcaaattttatgttatctaatttataagatcattattatat 446

                                                                       
Query: 61  atgtcattgctaataattattagatagaataaaatccagcaagtttaaacatttaccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 atgtcattgctaataattattagatagaataaaatccagcaagttcaaacatttaccaaa 386

                                                                       
Query: 121 ataaggacatttggttatttcataaattatgtgtatataattatgattctaccaagtacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaggacatttggttatttcataaattatgtgtatataattatgattctaccaagtacc 326

                                                                       
Query: 181 taagttattatcatattaatttttgttcttctcaagatagaaaattttattggtctttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 taagttattatcatattaatttttgttcttctcaagatagaaaattttattggtcttcat 266

                                                                       
Query: 241 catgtagtatttatattattaaaccatgtctaatttatagagtaaaatgaacacattttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgtagtatttatattattaaaccatgtctaatttatagagtaaaatgaacacattttc 206

                                                                       
Query: 301 tttactttattttttatttttaaataatgtaagaaatacccataaactctgaaatcaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tttactttattttttatttttaaataatgtaagaaatacccataaactctgaaatcaact 146

                                                                       
Query: 361 ctgactatttaaaggacaatattactttgtttttattttacaatataagccaaaatacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ctgactatttaaaggacaatattactttgtttttattttacaatataagccaaaatacaa 86

                                                                       
Query: 421 ctcaaataatatgatgt-aaaatgtattatacatcttcagacatttaaattttattgaaa 479
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 85  ctcaaataatatgatgtaaaaatgtattatatatcttcagacatttaaattttattgaaa 26

                                    
Query: 480 gcaatgcatttattatatagactta 504
           |||||||||||||||||||||||||
Sbjct: 25  gcaatgcatttattatatagactta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)