BAC Information

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BAC

Clone NameMSMg01-056P05
Chromosome1 (Build37)
Map Location 65,731,533 - 65,837,958
singlet/doubletdoublet
Overlap genenone
Upstream geneCcnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056P05.T7 (MSMg01no056_p05.b1)MSMg01-056P05.TJ (MSMg01no056_p05.g1)
ACCAG284230AG284231
length708700
length of high quality
(start - end)		474 (74 - 547)557 (76 - 632)
definitionCHROMAT_FILE: MSMg01no056_p05.b1 PHD_FILE: MSMg01no056_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:44 2005CHROMAT_FILE: MSMg01no056_p05.g1 PHD_FILE: MSMg01no056_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:44 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(65,731,533 - 65,732,006)(65,837,402 - 65,837,958)
sequence
NNTTCTCTATAATTGCGGCGCTAATACGACTCCTATATTCAGAGGTCCGC
GGAATTCATTAAACTTATCCAATGCAAGCTTCAATCATTTTGAGCCTAGT
CAAGTGTTTGTAACAGTACAAAGAAAATCAGTACCCTGACTGCTGAAGAA
ATCCATGAATAAGGAAGACACATTTAAGATAATCATAATGGCATATTTCA
TAGGTATTTTATTTTGGTACCTCGAGTGTATTATCCTTTTTATTTTAATT
AGATATTTTCTTTATATACATTTCAAATTTCAAGTGCTATCCCGAAAGTT
CCCTATACCCTCCACCCACTGCTCTCCTACCCACCCAGTCCCGCTTCTTG
GCCCTGGCATTCCCCTGTACTGGAGCATATAGAGTTTGCAATACCAAGGG
GCCTCAAGAACTATTTAGGTGACTTCTGTAAACCTTCTTCCCAGCTTAAT
TTGAAAAAAAAAAAAGGTAGAACCGGTGATTGGACAGGAGAAGGGAAGTT
GGAGTTGAAGGTTTAGGGGGTGAGAAGGAGAAGAAGAGAAGAGAGGACTA
TGGAGGAGGAGGTGCTATCTTTTCCCCTCCCCCACCCCTATTTTCCCCTT
CCCTTTTTCATCTTTCCTTTCTCCCCTTCATCTTTATATTTTTCACCCTC
TCCCTCCCTCCCTTTTATTTTCTTTTTTTTTCCCTTTCCTTCCCCTTTCT
TTTTCTTC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAAGTCCTAGCTACCTCAGTCAGC
AGATCATGGATCTCTGAAAATAATAATCTACATGTCTAGGAAGTTTAAAT
AGCTCGAAACTAGATAAATACAGAAGCATCTCATCTAAATGTACATGAAA
ATCTTTAAGTCAATTAAATAATGATAAATAATGAATTAAAAAATAGTAGT
AACTCAAACGCTACAATCACAAAGGAACTAAAATAAGGCCAACAACTGGT
TTCTCCATAGAACCAACAGAGGATGGTGGATTAACAATCCATTTGTTATT
TTAAGTCTTTCAAAAAATAATCCCATAAAGCAATGTCAAAAAATTATATT
TTAGCCCATAGTCATTAGAAGTACAATTCACATGATTGGCACAATAGAAT
AACGTAGTTGTGAAGCTATACTAAGCAAGAAAATGGCTTGCAGATAATAG
TGAGAATCTGCAGGATGATATAAAGAGATTTAAAACTAATCATTAAAATA
TTAACTAAAAGCTATGTAACACATCTATTTTTTATTTTTTCATTTAACAT
AAAAGAAATTAAAACTACCTAAAGCAATAATTAGCATATAATATTTAAGT
GGGAGCAGAAAAATTTAATATGTAAACAAAAATCATGTAAAAATTCAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_p05.b1 MSMg01no056_p05.b1 CHROMAT_FILE:
MSMg01no056_p05.b1 PHD_FILE: MSMg01no056_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:44 2005
         (474 letters)



>mm_chr1_65731333_65732206
          Length = 874

 Score =  917 bits (474), Expect = 0.0
 Identities = 474/474 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaagcttcaatcattttgagcctagtcaagtgtttgtaacagtacaaagaaaatcagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaagcttcaatcattttgagcctagtcaagtgtttgtaacagtacaaagaaaatcagta 260

                                                                       
Query: 61  ccctgactgctgaagaaatccatgaataaggaagacacatttaagataatcataatggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctgactgctgaagaaatccatgaataaggaagacacatttaagataatcataatggca 320

                                                                       
Query: 121 tatttcataggtattttattttggtacctcgagtgtattatcctttttattttaattaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttcataggtattttattttggtacctcgagtgtattatcctttttattttaattaga 380

                                                                       
Query: 181 tattttctttatatacatttcaaatttcaagtgctatcccgaaagttccctataccctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattttctttatatacatttcaaatttcaagtgctatcccgaaagttccctataccctcc 440

                                                                       
Query: 241 acccactgctctcctacccacccagtcccgcttcttggccctggcattcccctgtactgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acccactgctctcctacccacccagtcccgcttcttggccctggcattcccctgtactgg 500

                                                                       
Query: 301 agcatatagagtttgcaataccaaggggcctcaagaactatttaggtgacttctgtaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcatatagagtttgcaataccaaggggcctcaagaactatttaggtgacttctgtaaac 560

                                                                       
Query: 361 cttcttcccagcttaatttgaaaaaaaaaaaaggtagaaccggtgattggacaggagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcttcccagcttaatttgaaaaaaaaaaaaggtagaaccggtgattggacaggagaag 620

                                                                 
Query: 421 ggaagttggagttgaaggtttagggggtgagaaggagaagaagagaagagagga 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaagttggagttgaaggtttagggggtgagaaggagaagaagagaagagagga 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no056_p05.g1 MSMg01no056_p05.g1 CHROMAT_FILE:
MSMg01no056_p05.g1 PHD_FILE: MSMg01no056_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:44 2005
         (557 letters)



>mm_chr1_65837202_65838158
          Length = 957

 Score = 1069 bits (553), Expect = 0.0
 Identities = 556/557 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataagtcctagctacctcagtcagcagatcatggatctctgaaaataataatctacatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ataagtcctagctacctcagtcagcagatcatggatctctgaaaataataatctacatgt 698

                                                                       
Query: 61  ctaggaagtttaaatagctcgaaactagataaatacagaagcatctcatctaaatgtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ctaggaagtttaaatagctcgaaactagataaatacagaagcatctcatctaaatgtaca 638

                                                                       
Query: 121 tgaaaatctttaagtcaattaaataatgataaataatgaattaaaaaatagtagtaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tgaaaatctttaagtcaattaaataatgataaataatgaattaaaaaatagtagtaactc 578

                                                                       
Query: 181 aaacgctacaatcacaaaggaactaaaataaggccaacaactggtttctccatagaacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aaacgctacaatcacaaaggaactaaaataaggccaacaactggtttctccatagaacca 518

                                                                       
Query: 241 acagaggatggtggattaacaatccatttgttattttaagtctttcaaaaaataatccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 acagaggatggtggattaacaatccatttgttattttaagtctttcaaaaaataatccca 458

                                                                       
Query: 301 taaagcaatgtcaaaaaattatattttagcccatagtcattagaagtacaattcacatga 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taaagtaatgtcaaaaaattatattttagcccatagtcattagaagtacaattcacatga 398

                                                                       
Query: 361 ttggcacaatagaataacgtagttgtgaagctatactaagcaagaaaatggcttgcagat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttggcacaatagaataacgtagttgtgaagctatactaagcaagaaaatggcttgcagat 338

                                                                       
Query: 421 aatagtgagaatctgcaggatgatataaagagatttaaaactaatcattaaaatattaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aatagtgagaatctgcaggatgatataaagagatttaaaactaatcattaaaatattaac 278

                                                                       
Query: 481 taaaagctatgtaacacatctattttttattttttcatttaacataaaagaaattaaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taaaagctatgtaacacatctattttttattttttcatttaacataaaagaaattaaaac 218

                            
Query: 541 tacctaaagcaataatt 557
           |||||||||||||||||
Sbjct: 217 tacctaaagcaataatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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