BAC Information

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BAC

Clone NameMSMg01-057E22
Chromosome1 (Build37)
Map Location 107,709,183 - 107,709,636
singlet/doubletsinglet
Overlap geneTnfrsf11a
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023
Downstream geneEG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057E22.T7 (MSMg01no057_e22.b1)MSMg01-057E22.TJ (MSMg01no057_e22.g1)
ACCAG284494AG284495
length673690
length of high quality
(start - end)
248 (51 - 298)453 (69 - 521)
definitionCHROMAT_FILE: MSMg01no057_e22.b1 PHD_FILE: MSMg01no057_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:12 2005CHROMAT_FILE: MSMg01no057_e22.g1 PHD_FILE: MSMg01no057_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACCTATAGTCCGAGCGGGGCGGAATTCAGAGCCTTTTTCCAAAAAGGCA
TCCCAGTAGGGAGCCTGCAAGTAGCGGTGAAGACATTCCCTTTGAGTGAG
GATGGAGGCATCTCAGTTGGGAGCCTGGACGTACAGACAAATGCAAAACA
CCCAATGGGTGAGAGTAGAGGTTATGATATTATTGCTTTCCCAAGGATAA
ATTAATAGTTAATACCTAGCAGCTGGGCTAGATTTACCAGGTCATCACAT
AGCAATCTGAGGGGGCAGGACCAGCACCCAAGCTGTGGGGCCAGAGTCGG
TTTGATTTGCTTAGGCCTAGGATTTTCCATCAGCGTGAGGGAGAGAGAGC
AAGCTCACTCAAGGGTAGACGTCCTAAAACAAGACTGTGGATACCCCAAG
CTTACCAATTTGCCGGTGTTTGGATGGAGAAAGTAACCCAATGGCTGAAA
ACTCCATACAGCAGTGGAAATGTGAACCTGCGAGTTTGTAAATCAGAGTC
ACAGCACCAAATGTTGTATTTTGTAAAAAGAACAGAACAAATCAAAACAA
AACAAAACAAAACAAAACAAAACCAAATATATGTCTTGTAGAGCAAGGTA
TGATGAGGGGTGTCTTGACAGGTTCATGCCGAGGCATTCTCTTCCCCCTG
AGGGACCAGACACAGGAAAGGTA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGGCCAGGATTTCAAAAGCCCCTGGCCAGAGG
GACATCACCCACTGGCGCACATGCTTTGTCCTATGTGTGTTACTGTTTAC
TAGATGTTTGTTGAGTAGGTACACAACTCAAACTTACACAAAACTTTATA
CCACACATGTTTTCTGGGCAGAGCATATCACTGCCTTCTTGTATGTAGAC
ACAAGATGCCACTGCACATGGGGACATTTAAAATAGGACATCGTCCAATA
AAAGCAAAACTGAGAAAAGTGACATTGGATAGACAGAAGCAAGGACCCTC
ATTTAGGTGGGGGACCTAGCCAAGTGGTGGAATGCATGAGGTTGTAGTTT
CAGTCCCCAGTACCACACTGGAAGGAAATTCGTGTGAATCTGAGTAACAA
GAATGATTTGTGAGTGTTGGACACTTGGCTTACAATCTAGTTAAATTCCC
ATATTCCCGTATTCTGGAAACCTACGAGAAGCTGGAAGATTGAAGGCAAG
CACTTTGCATCTATTGCGAGGACACAGTGTGTAACCCTGGCCCACGGGAC
AGACGGCTGCTCACGTGTGACCTGCTGCCTGCTTCTGCTTTGTCCACTTG
CCTGAGGACCCCAGAGCCTTCAGGACCCTGGGATGAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_e22.g1 MSMg01no057_e22.g1 CHROMAT_FILE:
MSMg01no057_e22.g1 PHD_FILE: MSMg01no057_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:13 2005
         (453 letters)



>mm_chr1_107708983_107709836
          Length = 854

 Score =  816 bits (422), Expect = 0.0
 Identities = 446/454 (98%), Gaps = 1/454 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggccaggatttcaa-aagcccctggccagagggacatcacccactggcgcacatgcttt 59
           ||||| ||||||||| ||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 201 aggcctggatttcaacaagcccctggccagagggacatcacccactggcacaaatgcctt 260

                                                                       
Query: 60  gtcctatgtgtgttactgtttactagatgtttgttgagtaggtacacaactcaaacttac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcctatgtgtgttactgtttactagatgtttgttgagtaggtacacaactcaaacttac 320

                                                                       
Query: 120 acaaaactttataccacacatgttttctgggcagagcatatcactgccttcttgtatgta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaaactttataccacacatgttttctgggcagagcatatcactgccttcttgtatgta 380

                                                                       
Query: 180 gacacaagatgccactgcacatggggacatttaaaataggacatcgtccaataaaagcaa 239
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacacaagacgccactgcacatggggacatttaaaataggacatcgtccaataaaagcaa 440

                                                                       
Query: 240 aactgagaaaagtgacattggatagacagaagcaaggaccctcatttaggtgggggacct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactgagaaaagtgacattggatagacagaagcaaggaccctcatttaggtgggggacct 500

                                                                       
Query: 300 agccaagtggtggaatgcatgaggttgtagtttcagtccccagtaccacactggaaggaa 359
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 agccaagtggtggaatgcatgaggttgtagtttcagtccccagtactacactggaaggaa 560

                                                                       
Query: 360 attcgtgtgaatctgagtaacaagaatgatttgtgagtgttggacacttggcttacaatc 419
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 attcgtgtgaatctgagtaacaagaatgatttgcgagtgttggacacttggcttacaatc 620

                                             
Query: 420 tagttaaattcccatattcccgtattctggaaac 453
           ||||||||||||||||||||||||||||||||||
Sbjct: 621 tagttaaattcccatattcccgtattctggaaac 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 854
Length adjustment: 10
Effective length of query: 443
Effective length of database: 844
Effective search space:   373892
Effective search space used:   373892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)