BAC Information

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BAC

Clone NameMSMg01-057G07
Chromosome1 (Build37)
Map Location 17,798,250 - 17,798,712
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545306, Jph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1
Downstream geneLOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057G07.T7 (MSMg01no057_g07.b1)MSMg01-057G07.TJ (MSMg01no057_g07.g1)
ACCAG284560AG284561
length703710
length of high quality
(start - end)
474 (73 - 546)270 (73 - 342)
definitionCHROMAT_FILE: MSMg01no057_g07.b1 PHD_FILE: MSMg01no057_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:19 2005CHROMAT_FILE: MSMg01no057_g07.g1 PHD_FILE: MSMg01no057_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAAGATGCGCGGA
ATTCCACAGGGTTTCCGAAAAACAACATAAAGATATGAACAGTAACATGG
CATGAAATTATTATCTTAATCCATGAGATGACTTTTGCTTTGCTTGGCTG
CAGTGAATATAAACTCAAGTTAAAGGATTCCCCTCAACACAAAAACTGAA
ACTTAGTTTACTAGTTTATAGGGCCCATACTCCAACTCTCAAAATCAAAA
GCACTGTCCCTCAAGGGATGTTTTAATCAGTCACAAAAATGGTGAAGTAG
CTTGTGTTGAACAAGTCTCCTGCCTCTTCATAAAGAGTGTACTACACCCT
TGGAATAAAACTTGGCTTTATGCGTCAATGAGTGTGATATCAGTCACTGC
TCTGATAAACTATGCACACCACACGATTGTGAGAGGCTCCCTCTCTTCCC
CTAGCAAGTATTTCCGACACTCCTTAGACTACTCTGTTGTCTGAGGTCTC
AGACAGAGTACTATTATGATGTGGGGCCCCGGTTATTTTGCATGAATAAT
ATTATGTATAGCTTTCAGTGTGTAAACAACTGCTAAACACTCTTTGAGAA
GTAGAGTCTTTAACCTGTTGTGCTCGTGTATTTGTGTGTGCGTGTGTGAA
TGTATCTACCTTGATGCATGAACAAAGTATATTGTTTTTTTTTTTAGTGG
TAG
CATTGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACTCTCCTTCTGGCCTGCCCTTTCTTC
TGGGGCAGATTTCTAGCTAGTCTGCTCCCCTGAAGACACCATATGCTGAT
GCATCTTAAGAGAGCTGCTGCACACAGGGCAACTGACACCACAGCTTGAA
GGCACCATGGAAGATATGCTGCACACAGGGCTACTGAGCAACTGAAACCA
GCAGTCAGACTGGGCACAGGGTCCCCAGTGGAGGGGTTGAGGGAAGGACT
GAAGGAGCTAACAGAGCCTTGTCTGGTATCGATGGGAGGGGAGGCCCTTG
GTCCTATAGCTTGATGCCCTAGCGTGGAGGGATGCTAGAGCAGTGGGACA
GGAATGATCAGGCCCCCCCCGCTTGCCCTTGTATAGGCAGGGTAGAGTGT
TTGCACGGGCCATGGGAAGGTTAGGAAGGTGGGTTGGCATTTGGCGTACG
AGCGGATAATATATGCACTCTCGAGAGAAATGATCAAACCCACCCACCTA
TAGCATACCCAAATATACATCTTTACATATCACTATACATCTAAGACCCC
TGTCAAACTCAGAATACCCTATTACCCGTTTGCAACATATTGTAACTTTA
CCCCTACGCCGCANGATGAAAACTCCCGATAGTCTTATATCACGATATCC
CATCTTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_g07.b1 MSMg01no057_g07.b1 CHROMAT_FILE:
MSMg01no057_g07.b1 PHD_FILE: MSMg01no057_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:19 2005
         (474 letters)



>mm_chr1_17797911_17798781
          Length = 871

 Score =  685 bits (354), Expect = 0.0
 Identities = 440/474 (92%), Gaps = 11/474 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacataaagatatgaacagtaacatggcatgaaattattatcttaatccatgagatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 caacataaagatatgaacagtaacatggcatgaaattattatcttaatccatgagatgac 743

                                                                       
Query: 61  ttttgctttgcttggctgcagtgaatataaactcaagttaaaggattcccctcaacacaa 120
           |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 742 ttttgctttgcttggctgcactgaaaataaactcaagttaaaggattcccctcaacacaa 683

                                                                       
Query: 121 aaactgaaacttagtttactagtttatagggcccatactccaactctcaaaatcaaaagc 180
           || ||||||||        |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 682 aacctgaaact--------tagtttatagggccaatactccaactctcaaattcaaaagc 631

                                                                       
Query: 181 actgtccctcaagggatgttttaatcagtcacaaaaatggtgaagtagcttgtgttgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 630 actgtccctcaagggatgttttaatcagtcacaaaaatggtgaagtagcttctgttgaac 571

                                                                       
Query: 241 aagtctcctgcctcttcataaagagtgtactacacccttggaataaaacttggctttatg 300
           |||||| ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 570 aagtctactgccccttcataaagagtgtactatacccttgaaataaaacttggctttatg 511

                                                                       
Query: 301 cgtcaatgagtgtgatatcagtcactgctctgataaactatgcacaccacacgattgtga 360
            |||||||||||||||||||||||||||||||||||| || ||| |  | | ||||||||
Sbjct: 510 tgtcaatgagtgtgatatcagtcactgctctgataaagtaagcaga--aaaagattgtga 453

                                                                       
Query: 361 gaggctccctctcttcccctagcaagtatttccgacactccttagactactctgttgtct 420
            ||| ||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||
Sbjct: 452 caggttccctctcttcccctagcaagcatttcctacactccttagactcctctgtggtct 393

                                                                 
Query: 421 gaggtctcagacagagtactattatgatgtggggccccggttattttgcatgaa 474
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 392 gaggtctcagacagagtactattgtgatgtggggccc-ggttattttgcatgaa 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 871
Length adjustment: 10
Effective length of query: 464
Effective length of database: 861
Effective search space:   399504
Effective search space used:   399504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)