Query= MSMg01no057_h18.b1 MSMg01no057_h18.b1 CHROMAT_FILE:
MSMg01no057_h18.b1 PHD_FILE: MSMg01no057_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:27 2005
(508 letters)
>mm_chr1_95384049_95384953
Length = 905
Score = 814 bits (421), Expect = 0.0
Identities = 470/501 (93%), Gaps = 26/501 (5%)
Strand = Plus / Minus
Query: 6 gaattcatgggcttttccctaagtattatgatgtttcacggggaatggagtcttggttat 65
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gaattcatgggattttagttaagtattatgatgtttcacggggaatggagtcttggttat 704
Query: 66 ccctttccattagcttttataagctttcatgttgaaaactttaggatacctacataaaga 125
| ||||||||||||||||||||||||||||||||||||||
Sbjct: 703 c---------------------gctttcatgttgaaaactttaggatacctacataaaga 665
Query: 126 attttcaaagtgtccagatcaggggagaacatagaggcaaagaaaaaacaaacaaacaaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 attttcaaagtgtccagatcaggggagaacatagaggcaaagaaaaaacaaacaaacaaa 605
Query: 186 atgttcctgtcaaaaacaaataccagtcttctatactttagtcagctaactggaactgtg 245
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 604 atgttcctgtcaaaaacaaataccag---tctatactttagtcagctaactggaactgtg 548
Query: 246 taacagaagaatgaattaaggtcccttagatagaaagggcatccttgcaaaatgctatta 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taacagaagaatgaattaaggtcccttagatagaaagggcatccttgcaaaatgctatta 488
Query: 306 atagacaactaaatagattaaactatgtcagcaaagctgaaagttaggagtaggagtgaa 365
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 487 atagacaactaaatagattaaactatgtcagcaaagttgaaagttaggagtaggagtgaa 428
Query: 366 tataaagaactaaaaccttctaaaagagagataaataggtcagatggaatatagatttgc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tataaagaactaaaaccttctaaaagagagataaataggtcagatggaatatagatttgc 368
Query: 426 caggagctacaccctgactgcaaaaaatagtccagttaggagataataggaaaggct-gt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 367 caggagctacaccctgactgcaaaaaatagtccagttaggagataataggaaagg-tagt 309
Query: 485 cactaacgggggaaaaatgca 505
|||||||||||||||||||||
Sbjct: 308 cactaacgggggaaaaatgca 288
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 905
Length adjustment: 10
Effective length of query: 498
Effective length of database: 895
Effective search space: 445710
Effective search space used: 445710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_h18.g1 MSMg01no057_h18.g1 CHROMAT_FILE:
MSMg01no057_h18.g1 PHD_FILE: MSMg01no057_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:27 2005
(248 letters)
>mm_chr1_95306510_95307158
Length = 649
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 1 tggggacttttgtgagg-tataaaagtgccagggcactgagaggttgtggtggctgttgc 59
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggggacttttgtgagggtataaaagtgccagggcactgagaggttgtggtggctgttgc 260
Query: 60 ttcccctgttcctgtggtttgtcaggtcgttgtgagcaaagccacgagaagaagaacctg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcccctgttcctgtggtttgtcaggtcgttgtgagcaaagccacgagaagaagaacctg 320
Query: 120 gatatcccaaagatgaacatcaaacccggcccccagaagtaggtctaacaagactgaggc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatatcccaaagatgaacatcaaacccggcccccagaagtaggtctaacaagactgaggc 380
Query: 180 actctttctctcgagccttctttctttcctacctcgtgttgggtgttggaagggtggaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actctttctctcgagccttctttctttcctacctcgtgttgggtgttggaagggtggaga 440
Query: 240 agggtaagg 248
|||||||||
Sbjct: 441 agggtaagg 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 649
Length adjustment: 9
Effective length of query: 239
Effective length of database: 640
Effective search space: 152960
Effective search space used: 152960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
