BAC Information

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BAC

Clone NameMSMg01-057I11
Chromosome1 (Build37)
Map Location 34,273,626 - 34,273,909
singlet/doubletsinglet
Overlap geneDst
Upstream geneLOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik
Downstream geneLOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057I11.T7 (MSMg01no057_i11.b1)MSMg01-057I11.TJ (MSMg01no057_i11.g1)
ACCAG284662AG284663
length698695
length of high quality
(start - end)
340 (70 - 409)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no057_i11.b1 PHD_FILE: MSMg01no057_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:30 2005CHROMAT_FILE: MSMg01no057_i11.g1 PHD_FILE: MSMg01no057_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGGACCGCGGAAT
TCACCCATACCAGCTTTCCATAAACATGCATTCAATATACTCTAATCTGG
CTAGAATTGGCTCATTTTACCAGTTGGAGACATAACCTATCAGTGACCAG
TGGCAGGAGAATCTCCATGAGTTTGAGAACAGCTTGATCTATGCAGTAAG
ATTTTGACATAATTAAAATAAACAAAACAAGCTGGGCGTGGTGGCGCATG
CCTTTGATCCCAGCACCTGGGAGGCAGAGGCAAGCAGATTTCTGAGTTTG
AGGCCAGCCTGATCTACAGAATGAGTTCCAGGACAGCCAGGGCTATACAG
AGAAACCCTGTCTCGAAAAACCAACAAAACAAAACAAAACAAAACAAAAC
AAAACAAACCCCCCCCAACAAAACCAGAATGGTAGTGCCAGAACTGGAGG
GTGGGGGGGACCAGAGGAACATAAGTTAAGGCCATCCCTGGCCTACATGG
CAAGAAGCTGTTTCAAGACAGAAAGAACAAGAACAAGAACAAGAACAAGA
ACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACTAGAACAAGAAC
AAGAACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACTA
GAACAAGAACAAGAACAAGATAATCATATGGCGTTGGCTTTGGCCCAA
CCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATTGTCTTTGATTTATCTTAGTTCCT
CCCATCTCCTTTATATCTGGAATAAAATCTATACTCTTGCTTGGTGTTCT
CTGCTTGACATTTAACAATTAGTTTGGAGAGTCTAGGATGCTTTCCGTTC
CTTGGAAAATGCCTTGTGCGTACACTCGTGCACGCGCACATGTGCATGCG
CGCGCGCACACACACACATGGGAGAGGGGGAGGAGGAATTCGGATGTTTA
AATGTTTCTATGGTTGTTCTTGCATGGGCATCTCTCTCCTTTGATAGGCA
GCCAGTGGGTGCTAGCATGACAAAGTTGGATTTTATTAACATTGCGGTTA
TGGAGACATGCCACCCCCAGATAGCTATGATAATATAGGACAAATAGCTA
TTATGACCCACTCAGGAGGATCTGATTGGTAGGTAATGGGTTAGCTATGT
GTGGTTCCCATGGCGTTTTCACAGGGTAGCTGCCATGGTACCCATCAGCT
TCCTTCATTCCTCTTCAGGTACACAGCTGATAGTTATCACAGTTGGTATC
TATATTCTTGCCAGGAGCCCTTTTAGCCCATGCACTATCCACCCTGTGTT
CTCTGTGTTCAGCACATGTGGACTTATAAACAAACTTTTGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_i11.g1 MSMg01no057_i11.g1 CHROMAT_FILE:
MSMg01no057_i11.g1 PHD_FILE: MSMg01no057_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:30 2005
         (288 letters)



>mm_chr1_34273426_34274113
          Length = 688

 Score =  499 bits (258), Expect = e-146
 Identities = 279/288 (96%), Gaps = 4/288 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattgtctttgatttatcttagttcctcccatctcctttatatctggaataaaatctata 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tattgtctttgatttatcttagttcctcccatctcctttttatctggaataaaatctata 260

                                                                       
Query: 61  ctcttgcttggtgttctctgcttgacatttaacaattagtttggagagtctaggatgctt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttgcttggtgttctctgcttgacgtttaacaattagtttggagagtctaggatgctt 320

                                                                       
Query: 121 tccgttccttggaaaatgccttgtgcgtacactcgtgcacgcgcacatgtgcatgcgcgc 180
           |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 321 tccgttccttggaaaatgccttgtgcgtacactcatgcacacgcacatgtgcatgcgcgc 380

                                                                       
Query: 181 gcgcacacacacacatgggagagggggaggaggaattcggatgtttaaatgtttctatgg 240
           ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gc----acacacacatgggagagggggaggaggaattcggatgtttaaatgtttctatgg 436

                                                           
Query: 241 ttgttcttgcatgggcatctctctcctttgataggcagccagtgggtg 288
           ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttgctcttgcatgggcatctctctcctttgataggcagccagtgggtg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)