BAC Information

Click to search

BAC

Clone NameMSMg01-057J01
Chromosome1 (Build37)
Map Location 163,072,254 - 163,072,502
singlet/doubletsinglet
Overlap genenone
Upstream geneTnn, Mrps14, Cacybp, Rabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20
Downstream geneAnkrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057J01.T7 (MSMg01no057_j01.b1)MSMg01-057J01.TJ (MSMg01no057_j01.g1)
ACCAG284690AG284691
length705745
length of high quality
(start - end)
247 (74 - 320)52 (72 - 123)
definitionCHROMAT_FILE: MSMg01no057_j01.b1 PHD_FILE: MSMg01no057_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:33 2005CHROMAT_FILE: MSMg01no057_j01.g1 PHD_FILE: MSMg01no057_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTXXXXXXXXXXXXXXXXXXXXXXXXTAAATGCGNGAGCGAGCGCGGAA
TTCTATATTTTTACAAAAATGCGATGAAACGTCTTGCTTACCTTTCTAGT
TGTTTGGGGGAACTCATACAGTTAAACTTTGTGTCACCTAGACTGTTCCC
TGACAACTAGATAGGGGCAAAAGGAACTTAGGAATTATATGTGCTAGATT
CTTTTTTTTTTATTCGAAATGTAAAGTCCAAAACAGCTCTTAGGGTGGGC
AGAACGAGGGGAAAACCTGAGAAAAATCAGCAGAGAAGTACCACCTTAGT
TGTCTAGCAATATACGTGTTCTTTTATTTTGGCAGAGAGAAAACCAGGAA
GTTTTGTTCTGAAGTCAAAGAGAGCTATCACTTGTTTCTAGAATGAAATC
GTTAACAAGGAGGCCATATTCCTGATGGGCTCAGCATTTGCACTGAAGAT
GAATACCCACTTTAAAAATCAACGCTTGAAGCCTGGAGAAACGGCTTCGT
GGTTAAGAGCACATATTCTTACAGTTTGAGTCCAGCACCACAGAAGGCAA
TTTACAACTGCCTCAGGCTCCAGCTTCAGGGAACCTACCCTCTCTGGCCT
CCTTAAGCAAATATACATGTACACATGCAGGGACATACACAAAAACTAAT
CATAAAGAATGTACAATAAGTAAAACAAAAGGCATGATACTCTATGAACC
CATCT
CCGATGCTGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTCCTGGAACCTCATGAAAAGACAATTG
CAGTGGTACCCATTCTGAAATGCTCATCAATCTCCCCAGNNTAAGTGGAG
TATCGAGCGAGCACGCCCAATTCTTCTCTTTTTTTTTTAACCATTTGTGT
TCTTCCAATCCTGGTGCTATTTCTTTTCTCTCGCCTTTCCTCCTTCTTTT
TCTCCTTCCTCTCCCTCTCTTCTTTTTTCTCCTTCACTCCTTTTCCTTTC
TTTCACCTTTTCCTTTGACCTTACCCGTCCCATTCCTCTTCTTTTTTTCT
CACCTCTCCTCTTCCCCCCCCCCCTCCCCCTCTTTCCTCTTCCTCTTTTC
TTCTTCCCCTCTCCCCTCTTTCTCCTTTCTTTCCCTTTCCCTCTTTCTTT
TTCCCTCCCCCTCCTCTCCTTTCTTCCTCTTCCCCTCTTCTCTCTCTACC
CCCTTCCCTATCTTCCCCTCTCTCTTTCTCCCTTCTTCCTCCCTCTTTTC
CTCTTTTTCCTCTCTTCTTTTCCCTCTACTTTTTCTTCCTTCTCCCCTCC
CCTCTTCTCACTACTTTTCCTTCTTCTTTCCCTCTCTCTCCCCTCCCCTT
TTTTCCCTTTCTCCCACCTCTCCTCCCCTTCTTTCTTTTCTCCTTCTCCT
TTTCCCCTAAATTCCCATCCCGTAACCTCCCCTTCTCTTCGTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_j01.b1 MSMg01no057_j01.b1 CHROMAT_FILE:
MSMg01no057_j01.b1 PHD_FILE: MSMg01no057_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:33 2005
         (247 letters)



>mm_chr1_163072054_163072702
          Length = 649

 Score =  470 bits (243), Expect = e-137
 Identities = 247/249 (99%), Gaps = 2/249 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaacgtcttgcttacctttctagttgtttgggggaactcatacagttaaactttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atgaaacgtcttgcttacctttctagttgtttgggggaactcatacagttaaactttgtg 390

                                                                       
Query: 61  tcacctagactgttccctgacaactagataggggcaaaaggaacttaggaattatatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcacctagactgttccctgacaactagataggggcaaaaggaacttaggaattatatgtg 330

                                                                       
Query: 121 ctagattc--ttttttttttattcgaaatgtaaagtccaaaacagctcttagggtgggca 178
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctagattcttttttttttttattcgaaatgtaaagtccaaaacagctcttagggtgggca 270

                                                                       
Query: 179 gaacgaggggaaaacctgagaaaaatcagcagagaagtaccaccttagttgtctagcaat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gaacgaggggaaaacctgagaaaaatcagcagagaagtaccaccttagttgtctagcaat 210

                    
Query: 239 atacgtgtt 247
           |||||||||
Sbjct: 209 atacgtgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 649
Length adjustment: 9
Effective length of query: 238
Effective length of database: 640
Effective search space:   152320
Effective search space used:   152320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)