BAC Information

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BAC

Clone NameMSMg01-057J03
Chromosome1 (Build37)
Map Location 66,175,235 - 66,175,456
singlet/doubletsinglet
Overlap genenone
Upstream geneIdh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057J03.T7 (MSMg01no057_j03.b1)MSMg01-057J03.TJ (MSMg01no057_j03.g1)
ACCAG284694AG284695
length679688
length of high quality
(start - end)
426 (47 - 472)223 (86 - 308)
definitionCHROMAT_FILE: MSMg01no057_j03.b1 PHD_FILE: MSMg01no057_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:33 2005CHROMAT_FILE: MSMg01no057_j03.g1 PHD_FILE: MSMg01no057_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCAACAACTCACCTAAAGAAATACAGGAGAACACTGCTAAAGAGT
TACAAGTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTC
CTTAAAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGA
AAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATAC
TAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCG
ACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAG
CATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAG
ACTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAA
AAGATCCTAACTCAAAACATCCAGGAAATCTAGGACACAATGAGAAGACC
AAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAG
GACCAGTCAACATCTTTCAACAAAATTATGGAAGAAAACTTCCCAAAATC
TAAAGAAAGAGATGTCCATGAACATACAAGAAGCCTACAGAACTTCCAAT
TAGATGGAACCGTGAAATAAATTCCTCCG
CCCCCGATGCTGTGGGAGCCTGGCGGCGCCGGATCGTACCCGGGAGGNGA
ACTATAGAATACGAGAGAAAGTCTTGGNNTTAGTCCAACCGCATTTTTTG
AGTGGGTTGTTTGGGGCCTTGTTGGTGATTAACTTCTTGAGTTCTTTATA
TATTTTGGATATTAGCTCTTTATCAGACGTGGAGTTAGTGAAGATGTTTT
TTCCCTCTCTTCAACCCAGAAAGTAGAATTTAGATTTTCACTTCTTTTAT
AGTGGGCTGGACTTAGATGTTCACTGCTAATAACCACAATTTAGAAAGCC
AAAAAATAAATGTTCCCTCATTTTTGAGACCTGGAAGGAACAACTCTAGC
CTATTGTTCATGCCTACTTTTACAAGCTTATACGGACAGACACACACACA
CACATACAGGCACGCACATATACATGCTCACATACCAACTACTTCTGACT
GATTGCTCTAAACCTTGCTATTTTACCGGGGTCCGTTTTGACCTAAATAT
GTCGCTGTGTTCTCCCTTACCATTTTTACCTCCCCCTGTTCCCCTTCTTT
TCTCTTTTTCCCCACCCTCGTCTACCTCTTTTCCTTTCTCTCGCTCCCTT
CCTCGCCTCTTTTCTCTTCACCCCTCTCACCGGATCTATTGTTTCTAGCA
TGACTGTTTTTTTTTTTGTTTCCTGCCGACCCACGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_j03.g1 MSMg01no057_j03.g1 CHROMAT_FILE:
MSMg01no057_j03.g1 PHD_FILE: MSMg01no057_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:33 2005
         (223 letters)



>mm_chr1_66175034_66175656
          Length = 623

 Score =  406 bits (210), Expect = e-118
 Identities = 219/222 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaccgcattttttgagtgggttgtttggggccttgttggtgattaacttcttgagttctt 61
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 202 aaccgcattttttgagtgggttgtttggggttttgttggtgattaacttcttgagttctt 261

                                                                       
Query: 62  tatatattttggatattagctctttatcagacgtggagttagtgaagatgttttttccct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatatattttggatattagctctttatcagacgtggagttagtgaagatgttttttccct 321

                                                                       
Query: 122 ctcttcaacccagaaagtagaatttagattttcacttcttttatagtgggctggacttag 181
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 322 ctcttcaacccagaaagtagaatttagattttcacttcttttaaagtgggctggacttag 381

                                                     
Query: 182 atgttcactgctaataaccacaatttagaaagccaaaaaata 223
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atgttcactgctaataaccacaatttagaaagccaaaaaata 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)