Query= MSMg01no057_k10.b1 MSMg01no057_k10.b1 CHROMAT_FILE:
MSMg01no057_k10.b1 PHD_FILE: MSMg01no057_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:40 2005
(364 letters)
>mm_chr1_78341082_78341846
Length = 765
Score = 669 bits (346), Expect = 0.0
Identities = 358/362 (98%), Gaps = 1/362 (0%)
Strand = Plus / Minus
Query: 4 ggaattctttacata-cccggcccatcttctagatctttctccaggtctctggaatcttc 62
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggaattctttacagagcaaggcccatcttctagatctttctccaggtctctggaatcttc 461
Query: 63 acattccctgctcaaatgcccaggcccataggccacctttgctcatgtcacaaagttcag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acattccctgctcaaatgcccaggcccataggccacctttgctcatgtcacaaagttcag 401
Query: 123 gtcaggccaagatgaacaacagctttgcctcagtaggcactgatctagacctgagaccta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtcaggccaagatgaacaacagctttgcctcagtaggcactgatctagacctgagaccta 341
Query: 183 agcttctcttaggatcctgtatgcctcatatttggaaaacatggtagttcaaaaagaaac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agcttctcttaggatcctgtatgcctcatatttggaaaacatggtagttcaaaaagaaac 281
Query: 243 agaaaacagagaacccactgcatagtttacagcattaataaagtataaggctctgcctgg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 agaaaacagagaacccactgcatagtttacagcattaataaagtataaggctctgcctgg 221
Query: 303 accacttttatgcttctaaaggatgggaaaggaaggaaggaaagaaaaggaaaggaaagg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 accacttttatgcttctaaaggatgggaaaggaaggaaggaaagaaaaggaaaggaaagg 161
Query: 363 aa 364
||
Sbjct: 160 aa 159
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 765
Length adjustment: 9
Effective length of query: 355
Effective length of database: 756
Effective search space: 268380
Effective search space used: 268380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_k10.g1 MSMg01no057_k10.g1 CHROMAT_FILE:
MSMg01no057_k10.g1 PHD_FILE: MSMg01no057_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:40 2005
(403 letters)
>mm_chr1_78223138_78223940
Length = 803
Score = 714 bits (369), Expect = 0.0
Identities = 397/415 (95%), Gaps = 14/415 (3%)
Strand = Plus / Plus
Query: 3 gccagtctgctctacataggttccaggacagccagagcttcatacagagatgctgcctca 62
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 203 gccagtctgctctacataggttccaggacagccagagcttcatagagagatgctgcctca 262
Query: 63 acaaaacaaacaaaacaaaactaacaaaactgtggtctacataagaaaggggttttctgc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acaaaacaaacaaaacaaaactaacaaaactgtggtctacataagaaaggggttttctgc 322
Query: 123 cctctaaactagcactcttccgaaaggtgtttggtaatccctatacagtcccattttctg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cctctaaactagcactcttccgaaaggtgtttggtaatccctatacagtcccattttctg 382
Query: 183 tgcagggaattcacacagaacacaaaggactcaatccttcacccaggaccacagggtgat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgcagggaattcacacagaacacaaaggactcaatccttcacccaggaccacagggtgat 442
Query: 243 tgaagccgacctctgtggctgcctttctcctggaggtttgagggaagcatccatctcttg 302
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 443 tgaagccgacctctgtggctgccttcctcctggaggtttgagggaagcatccatctcttg 502
Query: 303 cctcttactgcttctaaagcaatgg--------------gtcatgacccctttggcaact 348
|||||||| |||||||| ||||||| |||||||||||||||||||||
Sbjct: 503 cctcttacagcttctaaggcaatggttcctgacccatgggtcatgacccctttggcaact 562
Query: 349 ctttatctccaaaaaaattgcattatgattcataactagcaaaattatggttatg 403
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctttatctccaaaaaaattgcattatgattcataactagcaaaattatggttatg 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
