BAC Information

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BAC

Clone NameMSMg01-057P16
Chromosome1 (Build37)
Map Location 6,383,471 - 6,383,810
singlet/doubletsinglet
Overlap geneEG620393
Upstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1, LOC100039302, LOC664946
Downstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057P16.T7 (MSMg01no057_p16.b1)MSMg01-057P16.TJ (MSMg01no057_p16.g1)
ACCAG285003AG285004
length683716
length of high quality
(start - end)
340 (49 - 388)45 (76 - 120)
definitionCHROMAT_FILE: MSMg01no057_p16.b1 PHD_FILE: MSMg01no057_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:07 2005CHROMAT_FILE: MSMg01no057_p16.g1 PHD_FILE: MSMg01no057_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCTCCTATGTCCAAAATCCGCGGAATTCTATTTTTTCCCTTATTGGTTT
TAACGTATTTTACGTTAAACATATGAAGTTCCTAGATTAATATAATACTT
GGGCTTGTTCCTCTCCTAACATTGTATGATTATTTAAAACATGGGCCTTG
GGATGTAGTTTAAAGGTAGATCATGTACTTGTGTTTGCATCAGGTTCTGA
TATTAGATCCTGCTAAAAAAAATCAAGATGAAAACAGTTTTGAAGTTCAG
TGGTTTCTTTTGTAATATTCTGTGTAAATGCCTGTTTCAGATTACTATAT
ATCCAAGATTTCATTTACTTTTATCTTATGTGTATGTGTTTTTGCCCATG
TGTGTGCCTGGATCTGGAGTTGTAAGCTGTCATGTGGTTTCCACTAAATT
TCCTGGAAGAGCATCCAGTATGTGTCGCTTTTGAGTCAGCCCTGTTTCAG
ATTGTTTATCAAGTGGCTATAATCCCAAGTTTAATACGTTTTAGAAGCAT
TTTTCTGTGTTACATGTTTTCTGTCACTATGAAGATTACAACTTTCCTTC
TGTATAAAATTCCCTCCTCTGTGTCTGCATACCAGCCTGCTTTCTCAGCA
TATTTCACAAAAGATAATATAAAGCTGGGTGTGGTGTTTCACGCCTTTAA
TCCCAGTACTTGGGAAGGCAAAGGCAGGTAGAT
TCATTCTATCTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTACTCCATTTT
TAAATTGGGTTATTTGGGTTTTTTGGAGCGTAACTTCTTTATTTCTTTAT
ATATTTTGGATATCATTACTCTGACAGATGTAGCGCTAGTGAAGATCTTT
TCCCAATCTGCTGGTTGCCATTTTGTCCTATTGACAATGACCTTTGCCTT
ACAGAAGCTTTACAATTTCATGACATCCCATTTGTCACTTGTTGATCTTA
GAGCCTGACCCATGGTGTTCTGTCCCTGAATTGTCCTCTGCGCCAGTCGA
GTTCAACGCTATCTTCCCACTTCCTGTCCCATTAGATTTTCTTTATCTGC
TTTTATGCATAGCCCTATGACCTACTCGCTTCTGAGCTCCGAATAATGCG
ATCCTTGTGCACCTATCTCTCTTGTTCCTCCTGTACACTGCTTCTTTCAT
TCATCTACTCTTCTCTGAAAACGCTCTCTTTTTTCTCTACTATCCGGCTT
CGTCTCTCCTCTCTCTGCTCTCGTGCTCTTACTCCTGCGCTCTTCTCTCT
GTTCCCCTGACTCCTCGCTCTTCGTCACTTCCTCCCTATATCTATCATCC
TCTAATTCTTTATAGTCACCTCATTCCCCTCCCATATTACTCCCATCTTA
CATCTTCTCCTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_p16.b1 MSMg01no057_p16.b1 CHROMAT_FILE:
MSMg01no057_p16.b1 PHD_FILE: MSMg01no057_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:07 2005
         (340 letters)



>mm_chr1_6383271_6384010
          Length = 740

 Score =  611 bits (316), Expect = e-179
 Identities = 334/340 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaacgtattttacgttaaacatatgaagttcctagattaatataatacttgggcttgt 60
           ||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tttaacgtattttacattaaacgtatgaagttcctagattaatataataattgggcttgt 260

                                                                       
Query: 61  tcctctcctaacattgtatgattatttaaaacatgggccttgggatgtagtttaaaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctctcctaacattgtatgattatttaaaacatgggccttgggatgtagtttaaaggta 320

                                                                       
Query: 121 gatcatgtacttgtgtttgcatcaggttctgatattagatcctgctaaaaaaaatcaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatcatgtacttgtgtttgcatcaggttctgatattagatcctgctaaaaaaaatcaaga 380

                                                                       
Query: 181 tgaaaacagttttgaagttcagtggtttcttttgtaatattctgtgtaaatgcctgtttc 240
           || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaaacagttttgaagtttggtggtttcttttgtaatattctgtgtaaatgcctgtttc 440

                                                                       
Query: 241 agattactatatatccaagatttcatttacttttatcttatgtgtatgtgtttttgccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agattactatatatccaagatttcatttacttttatcttatgtgtatgtgtttttgccca 500

                                                   
Query: 301 tgtgtgtgcctggatctggagttgtaagctgtcatgtggt 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtgtgcctggatctggagttgtaagctgtcatgtggt 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)