BAC Information

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BAC

Clone NameMSMg01-057P22
Chromosome1 (Build37)
Map Location 103,853,584 - 103,853,882
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057P22.T7 (MSMg01no057_p22.b1)MSMg01-057P22.TJ (MSMg01no057_p22.g1)
ACCAG285015AG285016
length698723
length of high quality
(start - end)
581 (63 - 643)299 (75 - 373)
definitionCHROMAT_FILE: MSMg01no057_p22.b1 PHD_FILE: MSMg01no057_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:08 2005CHROMAT_FILE: MSMg01no057_p22.g1 PHD_FILE: MSMg01no057_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATAGTTCGAGGATCCGCGGAATTCTTTGTT
CAGTTCCCGAGCCCCATTTTTTAACGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCACTATCTGATTT
ATGATAGGTAAAGATCATTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCATGAGGTCCCTT
TTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA
TTTTTCCCCTGTGCCCATTTCTTCAAGGATTTTCCCCTCTTTCTCCTCTA
TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTGACCTTAGTACACGGAGAGAAGAATGGTTCGATTCGCATTCTTCTACA
TGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCT
TCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTG
TGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCT
GTCTCTATACCAGTACCATGCGGTTTTTATCACAATTGCTCTGTAGTAAA
GCTTTAGGTGAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGA
TCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAGAAAGTCCATGGTACTCAGGCGA
TAGAAGAAGAGACTAAAAAACTAGCCTTTGGGAAAAAATTCCTGTTGACA
TACTGTCTTCATATTAGAAAAATCATCACACACATCTCCTCATGTATCTT
TGAACAAAATTAGTGGTCTTTATGTATGAATGGAAGGTCTGTTATGTGAA
AATGCTAGGTGTCAAAAGGAGATATATTGACAGGTAGATAAAAGAGGCCT
TTTGAGATGCTAGTTTGATAAACATATGTACTTCAACATTTATTTTATAT
TTTGTGTGTGTTTAGATATATGTGTCTGTGTGTGTGTGAGTATGCGTGTG
TCAGTTTACACTATATCTTTTTATCATCTTTTGACCTTTCCTCACCTCCT
TGTTCGCTTCTCTCTTCTTCTTTATCCACTACTTCTCTTCTTCTTTCTCA
TCTCTTCTCCTCTTTAGGCTTTCTCCTGTTCTTTCTTATCCATCTACTCA
TCTCTTCTCTTCTCCTATACTCTTTTTTTTCTATCCCTCTGCTACTCTCT
TTACTCCCTTTTCATCCACCCTTTCTCGTCTTCCTCCTCCTCATCTCTAC
TCATACTCCTTCTATCTCCTTCACTCCTTAAATTACCTTCTCTACTCGCA
TCTTACTCTTTACTCAATCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_p22.g1 MSMg01no057_p22.g1 CHROMAT_FILE:
MSMg01no057_p22.g1 PHD_FILE: MSMg01no057_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:08 2005
         (299 letters)



>mm_chr1_103853384_103854082
          Length = 699

 Score =  509 bits (263), Expect = e-148
 Identities = 290/299 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaaagtccatggtactcaggcgatagaagaagagactaaaaaactagcctttgggaa 60
           ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 499 acagaaagtccatggtacttaggcaatagaagaagagactaaaaaactagcctatgggaa 440

                                                                       
Query: 61  aaaattcctgttgacatactgtcttcatattagaaaaatcatcacacacatctcctcatg 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaaattcctgttgacatactgccttcatattagaaaaatcatcacacacatctcctcatg 380

                                                                       
Query: 121 tatctttgaacaaaattagtggtctttatgtatgaatggaaggtctgttatgtgaaaatg 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct: 379 tatctttgaacaaaattagtggtcgttatgtatgaatggaaggtctgttatatgaaaaag 320

                                                                       
Query: 181 ctaggtgtcaaaaggagatatattgacaggtagataaaagaggccttttgagatgctagt 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 319 ctaggtgtcaaaaggagatatattgacaggtaggtaaaagaggccttttgagatgctagt 260

                                                                      
Query: 241 ttgataaacatatgtacttcaacatttattttatattttgtgtgtgtttagatatatgt 299
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 259 ttgataaacatatgtacttcaacatttattttgtattttgtgtgtgtttagatatatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)