BAC Information

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BAC

Clone NameMSMg01-058C13
Chromosome1 (Build37)
Map Location 102,901,319 - 102,901,837
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058C13.T7 (MSMg01no058_c13.b1)MSMg01-058C13.TJ (MSMg01no058_c13.g1)
ACCAG285140AG285141
length668681
length of high quality
(start - end)
519 (63 - 581)544 (86 - 629)
definitionCHROMAT_FILE: MSMg01no058_c13.b1 PHD_FILE: MSMg01no058_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:20 2005CHROMAT_FILE: MSMg01no058_c13.g1 PHD_FILE: MSMg01no058_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAAAATTTGCGGCGCTATACGATCACTATCAAAGAGGATCCGCGGAAT
TCCAGATTACTCTGAAGGAGGAATCATGGGCAAATTCTGCATATGGCTTG
CTTCCAGATACATTTTAAGCTACTTTTCATTTTAAATAATATTTTATTTT
GAATTAATGTGTATGTTTGTGTGTCCACACATTGGTTATGTTGACTGTAG
ATGCCTGTGGATGCTAGAGGTACAAGATCCATTGAAGAATTATTGTCTTT
TGTGAGAGCAATGAATGTTCTTTCCTGCTGAAACATTTCTTACCTGTCGA
GCCATTCCTCCAATCCTCAGCATTTTTTTTCTTATACATTTAGGCTAAGC
TTCCTAGAGTACCAAGCTTTTCCTTTACAAACCATTTAGAATCCTGGGTT
AGTTTTGTTGTTTTTGTTGTTGTTGTTGTTATTTTTTTCAGCTTAACACA
ATCTAGCATTATCTGGGAAGAAATGTTCACTTGAATCAATGCCTCCATCA
TATTGTCGATAGACAAGTCTGTAAAGATATTGACTTGATAATGATTGATG
TAGGAAAAGTACCATTCGTATGAAGGTGGTTCTGGGAGCTAATATGAGGA
CTAAGACTGTTAGCAGCATTTCTCCATGGCCTCCTGTTTCTATTTCTGCC
TCCAGATTTTTGCCTTGG
NCCCCCCTCCNACAATGCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGA
GCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGA
GTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTA
AAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGATGTC
TTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTC
TCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCT
GTGCCCATATCTTCAAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAG
TGTCTCTGGTTTTATGTGAAGTTTCTTGATCCACTTAGATTTGACCTTAG
TACAAGGAGATAAGTGTGGATCGATTCGCATTCTTCTACATGATAACAAC
CAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGAT
GGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCCTAGGTGTGTGGGTTCA
TTTCTGGGTCTTCAATTCTATTCCATTGTTCTACTGGTCTGTCTCTATAC
CAGTACCATGCAGTTTTTCAAAATGTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_c13.b1 MSMg01no058_c13.b1 CHROMAT_FILE:
MSMg01no058_c13.b1 PHD_FILE: MSMg01no058_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:20 2005
         (519 letters)



>mm_chr1_102901119_102902037
          Length = 919

 Score =  959 bits (496), Expect = 0.0
 Identities = 514/520 (98%), Gaps = 2/520 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaggaggaatcatgggcaaattctgcatatggcttgcttccagatacattttaagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaggaggaatcatgggcaaattctgcatatggcttgcttccagatacattttaagcta 260

                                                                       
Query: 61  cttttcattttaaataatattttattttgaattaatgtgtatgtttgtgtgtccacacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttcattttaaataatattttattttgaattaatgtgtatgtttgtgtgtccacacat 320

                                                                       
Query: 121 tggttatgttgactgtagatgcctgtggatgctagaggtacaagatccattgaagaatta 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tggttatgttgactgtagatgcctgtagatgctagaggtacaagatccattgaagaatta 380

                                                                       
Query: 181 ttgtcttttgtgagagcaatgaatgttctttcctgctgaaacatttcttacctgtcgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtcttttgtgagagcaatgaatgttctttcctgctgaaacatttcttacctgtcgagc 440

                                                                       
Query: 241 cattcctccaatcctcagcattttttttcttatacatttaggctaagcttcctagagtac 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattcctccaaccctcagcattttttttcttatacatttaggctaagcttcctagagtac 500

                                                                       
Query: 301 caagcttttcctttacaaaccatttagaatcctgggttagttttgttgtttttgttgttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagcttttcctttacaaaccatttagaatcctgggttagttttgttgtttttgttgttg 560

                                                                       
Query: 361 ttgttgttatttttttcagcttaacacaatctagcattatctgggaagaaatgttcactt 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgttattatttttttcagcttaacacaatctagcattatctgggaagaaatgttcactt 620

                                                                       
Query: 421 gaatcaatgcctccatcatattgtcgatagacaagtctgtaaagatattgacttgataat 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 gaatcaatgcctccatcatattgtcgatagacaagtctgtaaagatattgacttaataat 680

                                                   
Query: 481 gattgatgtaggaaaagtaccattcgtatg-aaggtggtt 519
           |||||||||||||||||||||||||||| | |||||||||
Sbjct: 681 gattgatgtaggaaaagtaccattcgta-gcaaggtggtt 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)