BAC Information

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BAC

Clone NameMSMg01-058E01
Chromosome1 (Build37)
Map Location 69,083,628 - 69,187,339
singlet/doubletdoublet
Overlap geneErbb4, LOC667842
Upstream genenone
Downstream geneEG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058E01.T7 (MSMg01no058_e01.b1)MSMg01-058E01.TJ (MSMg01no058_e01.g1)
ACCAG285212AG285213
length686706
length of high quality
(start - end)
281 (72 - 352)150 (82 - 231)
definitionCHROMAT_FILE: MSMg01no058_e01.b1 PHD_FILE: MSMg01no058_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:27 2005CHROMAT_FILE: MSMg01no058_e01.g1 PHD_FILE: MSMg01no058_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,083,628 - 69,083,908)(69,187,190 - 69,187,339)
sequence
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAAGCGGCGGA
ATTCTTTAAGTATCCCACATGTTGTGAGCCAATCAATATTACAAACGATG
AATTCTCCATCTGTCCTATTACTGTTTAGTGCAGAGACTAGGTTCTATGT
GGTGGTTTGCATGAACATGCATCACATAGATGTGTACAATTTCATGCTTA
GTCCCTAGTTGATGAGTTTTCTTTTCTTTTTTTTCTTTTAGATATTTTCT
TCATTTACATTTCAAATGCTATCCCCAAAGTCCCCCAACCCACCCACTCC
TGCTTCCTGGCCCTGGTATTCTCCTGTACTGGGGCATATAATCTTCACAA
GACTAAGGTCCTCTCCTCCCATGATGGTCTACTAGGCCATCCTCTGCTAC
ATATGCAACTAGAGACGCAAGCTCTGGGGGGTACCGGTTAGTTCATATTG
TTGTTCTACCTATAGGGTTGCAGACCACTTTGGTGCCTTGGGAACTTTTT
CTAGCTCCTTCATTGGAGACCCTGTTGTTCTATCCAATAGCTGATTGTGA
CAGTCCACTTCTGTATATGTTATCGTCTGCCATATTCTCCCAATACATAG
TTGCCCTGTCCGTTAAATATTGCCGTTTTACCTTATCTTTTGAGACCTTA
CTATATTCTTCCATCCCCACCCATATTTTATCTCTG
CCCCCCCCCCGATGAAGCGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCAATAAGATCAGTTG
ACTCATAGCACTAAATATCTACAAACCCAAGGTTCTTTCATCGCACAAGA
TAATAGGTCTGCATGTTCTAGGTTTAGTGCATGGGGCATCTTTGGAGAAG
CTATGTTCTGCATGTCTACTATACAAGAGTACAGTGCTGAAAATGACTGT
GTTCTGCAAAGTCACTCATTAAAAACAACAAGGCAAGTCACCCTTAACAC
TTACCAAATTTAGTGGCTAGAAGAAAAATAATTCTTAATAATCACACGTG
GACGTGCGTGCGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGTG
TGTGTAAAAGTACACTATGACTCATGAGAAGGATAAAAGAGGTTTAAAAT
TAACGAGGAGGGGCGCATACCAGAATCACTGGATATTTGTTATTACAGTA
AAAAGATTACTAATGACAGGTAGAGGAAGAAGACAGACTGAACGCTTATG
GGGTACCCATAGGGACACTTTGAGTTTTGTGTATGCGTGCGTGCTGTGCG
TGTGTCGCGTGTGCGTGCGCTGCGTGTCTCTGATACCGCTACCCCTAACC
CCTCCTCCTCCCTTCCTCCCTCTTATTCCTATTCCTTTTCTCTTATCTAT
CCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_e01.b1 MSMg01no058_e01.b1 CHROMAT_FILE:
MSMg01no058_e01.b1 PHD_FILE: MSMg01no058_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:27 2005
         (281 letters)



>mm_chr1_69083428_69084108
          Length = 681

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtgagccaatcaatattacaaacgatgaattctccatctgtcctattactgtttagtg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtgagccaatcaatattagaaacgatgaattctccatctgtcctattactgtttagtg 260

                                                                       
Query: 61  cagagactaggttctatgtggtggtttgcatgaacatgcatcacatagatgtgtacaatt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagagactaggttctatgtggtggtttgcatgaacatgcatcacatagatgtgtacaatt 320

                                                                       
Query: 121 tcatgcttagtccctagttgatgagttttcttttcttttttttcttttagatattttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgcttagtccctagttgatgagttttcttttcttttttttcttttagatattttctt 380

                                                                       
Query: 181 catttacatttcaaatgctatccccaaagtcccccaacccacccactcctgcttcctggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catttacatttcaaatgctatccccaaagtcccccaacccacccactcctgcttcctggc 440

                                                    
Query: 241 cctggtattctcctgtactggggcatataatcttcacaaga 281
           ||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 441 cctggcattcccctgtactggggcatataatcttcacaaga 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no058_e01.g1 MSMg01no058_e01.g1 CHROMAT_FILE:
MSMg01no058_e01.g1 PHD_FILE: MSMg01no058_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:27 2005
         (150 letters)



>mm_chr1_69186990_69187539
          Length = 550

 Score =  290 bits (150), Expect = 2e-83
 Identities = 150/150 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccaataagatcagttgactcatagcactaaatatctacaaacccaaggttctttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 actccaataagatcagttgactcatagcactaaatatctacaaacccaaggttctttcat 291

                                                                       
Query: 61  cgcacaagataataggtctgcatgttctaggtttagtgcatggggcatctttggagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cgcacaagataataggtctgcatgttctaggtttagtgcatggggcatctttggagaagc 231

                                         
Query: 121 tatgttctgcatgtctactatacaagagta 150
           ||||||||||||||||||||||||||||||
Sbjct: 230 tatgttctgcatgtctactatacaagagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 550
Length adjustment: 8
Effective length of query: 142
Effective length of database: 542
Effective search space:    76964
Effective search space used:    76964
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)