BAC Information

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BAC

Clone NameMSMg01-058F22
Chromosome1 (Build37)
Map Location 148,342,431 - 148,342,707
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383571
Downstream geneB830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058F22.T7 (MSMg01no058_f22.b1)MSMg01-058F22.TJ (MSMg01no058_f22.g1)
ACCAG285301AG285302
length698695
length of high quality
(start - end)
276 (68 - 343)69 (147 - 215)
definitionCHROMAT_FILE: MSMg01no058_f22.b1 PHD_FILE: MSMg01no058_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:36 2005CHROMAT_FILE: MSMg01no058_f22.g1 PHD_FILE: MSMg01no058_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCGCGGAATT
CNCGAGTTTTCACATTCGGAAATCCTGCAGGATCTTCCCACTCACAGTTC
TTTTCAGAGTTTACCTGCACTGGGAATGTTATCATTAGGATTAATAGTAT
TCCATCAGTGCATTTCACTAGCACTTCCTTGGAATCCTTTCCCTTGCAGA
AACTGATCCAGGCATAGTAAGAAAATCGACTTAACACACAGCCCAAATAA
ACCAGCAGGACCGGTCCCATTGCATTGATCTAATCCTCAGCGATTTTTTT
GCATAGACAGGGGCTGGTAGGTGAATGGTTGAAGGTCGTAGTCACTCAGA
GTTTTCGAGGGCGCCATGCTCCGCACGGTTAGCAAGATGACCAAGAGGCT
GATGATGGGTTACCTATGCGGCAGCAATCTTCCTAGGTCCCACTTCCTCG
TTAAATCATGCAGCCTGTGTTTAAGGCAATTGCTTTCAGTATTGAGCCCC
TGAGCTAAAGACCATGCTACACCAACCTAGATGTTAGGATAGTCTGAGAA
CTGTCCCTGCCCCACTGGCCGCGGCTTAGGAGGGGTGCAACGAGTGGCCG
TCTGTGTCATGTTTGCCTTGCACCTGACTCGCAGTGTAACCAAGCTAATT
TATATCAAGAAATACCTCTGTCGTGGATCGCATCGGCAACACATTTTG
TGAATGTGATAGGCCTGGTGGCCGCCTGGTCCCAAAATGGAGGTGACCTA
TATAATTATCTGCGGAATTGCTTCACTCTATGAGTCACCTATATTTGCTA
TTCTTCAGTATCAGGTTCATGTGTCATTACTTCTGGTAAAGTAAGTTGAA
CTTAAGCTGTACAAATAATATATTTTACTTGAGACTCTGAAAGGTCTCAG
TATATTTCTAAGAACTAGTAGGTTTTAATGTATCTTGTGTTCAACTAAAG
GGGACATCAGTTTCATCTACATATTCCATGTGTAAACATGTCCTGAAAGT
TTCCATCTTTTAAATATTGGCACAGAGAAAACCTACACAACAAATATATC
CTTATTAGCGTGCAAATCATTCTAGTTATTTCCATTTATAGTATTTCTGA
TACATGAATACTGTTTTGAATAATTGTTTTGCTTCTTAATTTTTCCAAAC
GTTTGAAGGCATAAGTAGATCGTGAGGGATTTTAATGAAAAGCATTACCC
AATGCTTAGTATATTAAAAAAGCATACTTACTTCGCCTGTATTTCTTGTT
TCATTATAGGCTAAGTGACTCGCACGTTATATTATTCGGCAACTGACACA
CACTTTCCACGTTGGCCGTTTCTAATGACTGCTCAAATGCCCATGTCATG
GACACGATATCTTTTCACTCAACTGCATCATATTCCTTCATGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_f22.b1 MSMg01no058_f22.b1 CHROMAT_FILE:
MSMg01no058_f22.b1 PHD_FILE: MSMg01no058_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:36 2005
         (276 letters)



>mm_chr1_148342231_148342907
          Length = 677

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%), Gaps = 1/277 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaaatcctgcaggatcttcccactcacagttcttttcagagtttacctgcactgggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggaaatcctgcaggatcttcccactcacagttcttttcagagtttacctgcactgggaat 418

                                                                       
Query: 61  gttatcattaggattaatagtattccatcagtgcatttcactagcacttccttggaatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gttatcattaggattaatagtattccatcagtgcatttcactagcacttccttggaatcc 358

                                                                       
Query: 121 tttcccttgcagaaactgatccaggcatagtaagaaaatcgacttaacacacagcccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tttcccttgcagaaactgatccaggcatagtaagaaaatcgacttaacacacagcccaaa 298

                                                                       
Query: 181 taaaccagcaggaccggtcccattgcattgatctaatcctcagcga-tttttttgcatag 239
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 297 taaaccagcaggaccggtcccattgcattgatctaatcctcagcgattttttttgcatag 238

                                                
Query: 240 acaggggctggtaggtgaatggttgaaggtcgtagtc 276
           ||||||||||| |||||||||||||||||||||||||
Sbjct: 237 acaggggctgggaggtgaatggttgaaggtcgtagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 677
Length adjustment: 9
Effective length of query: 267
Effective length of database: 668
Effective search space:   178356
Effective search space used:   178356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)