Query= MSMg01no058_h04.b1 MSMg01no058_h04.b1 CHROMAT_FILE:
MSMg01no058_h04.b1 PHD_FILE: MSMg01no058_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:42 2005
(498 letters)
>mm_chr1_162502126_162503025
Length = 900
Score = 907 bits (469), Expect = 0.0
Identities = 492/500 (98%), Gaps = 2/500 (0%)
Strand = Plus / Plus
Query: 1 ctaggcaagcattctaccaactgaactacatgcctagctctgaaacagcttcgaccagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ctaggcaagcattctaccaactgaactacatgcctagctctgaaacagctttgaccagag 260
Query: 61 aag-aaancactcacaag-aaatacacagagcagagcggtgcacctttggtccagcagtg 118
||| ||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 aagaaaagcactcacaagaaaatacacagagcagagcagtgcacctttggtccagcagtg 320
Query: 119 taagcactgtgcccagacccagtgttacttcagtgtaggtgatactgtgctcagaagtca 178
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagcgctgtgcccagacccagtgttacttcagtgtaggtgatactgtgctcagaagtca 380
Query: 179 cattgtcagattccccacagcttgttctttttatctccttaatacataggtccatctttc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgtcagattccccacagcttgttctttttatctccttaatacataggtccatctttc 440
Query: 239 tcagacctaatgattagagaatggggaggatctgagaaaaatcctctaagataacaatct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagacctaatgattagagaatggggaggatctgagaaaaatcctctaagataacaatct 500
Query: 299 catttattttaaaacatataacttatggtatctgaagactaaatcagctaataattgaaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catttattttaaaacatataacttatggtatctgaagactaaatcagctaataattgaaa 560
Query: 359 aatatatgtgacaaaatagttcaaactccattttaataaatgacagaattcatattgaag 418
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 aatgtatgtgacaaaatagttcaaactccattttaataaatgacaaaattcatattgaag 620
Query: 419 agaaaaataagacaattcctacttactatggtaaccttgatgaaaaaagaatgttttaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaaaataagacaattcctacttactatggtaaccttgatgaaaaaagaatgttttaaa 680
Query: 479 cattttttaatacacagaaa 498
||||||||||||||||||||
Sbjct: 681 cattttttaatacacagaaa 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 900
Length adjustment: 10
Effective length of query: 488
Effective length of database: 890
Effective search space: 434320
Effective search space used: 434320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no058_h04.g1 MSMg01no058_h04.g1 CHROMAT_FILE:
MSMg01no058_h04.g1 PHD_FILE: MSMg01no058_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:42 2005
(508 letters)
>mm_chr1_162656348_162657255
Length = 908
Score = 946 bits (489), Expect = 0.0
Identities = 501/505 (99%)
Strand = Plus / Minus
Query: 4 atatatgaattaaacaaaatcagaaaaatgaaatgatgtattccatttggtgaaacaaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 atatatgaattaaacaaaatcagaaaaatgaaatgatgtattccatttggtgaaacaaat 649
Query: 64 tccatctttttgtaagtgctgaggtcaattgcagcgtcttgtttatgatcaaggtaccac 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 648 tccatctttttgtaagtgctgaggtcaattgcagcatcttgtttatgatcaaggtaccac 589
Query: 124 tgagctgcaattgcagatcaacagtgctagcagtttcttctattggaaggaatatttttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tgagctgcaattgcagatcaacagtgctagcagtttcttctattggaaggaatatttttg 529
Query: 184 ttttaagcaaatttaaaaaacagtgtttcctagatgaatatgttcattgaagttaagaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ttttaagcaaatttaaaaaacagtgtttcctagatgaatatgttcattgaagttaagaaa 469
Query: 244 tttgttatactattcagtaagatcttacttgcatttcccagagtgagtattgacaatagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tttgttatactattcagtaagatcttacttgcatttcccagagtgagtattgacaatagg 409
Query: 304 acctttgaagcctcctttttcaccatgttcttcaaccaacgcgttgatgggctgagaggt 363
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 acctttgatgcctcctttttcaccatgttcttcaaccaacgcgttgatgggctgagaggt 349
Query: 364 ttgacgtctttggtgtttctagcacatagtttgagatgttaattctgacacttatttgga 423
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttgacgtcttcggtgtttctagcacatagtttgagatgttaattctgacacttatttgga 289
Query: 424 tctgggggcaagaataatttttagaaagtgtagtatttattgttctttgtcactttacgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 288 tctgggggcaagaataatttttagaaagtgtagtatttattgttctttgtcactttaggg 229
Query: 484 aaaaattgagccataaataagtaca 508
|||||||||||||||||||||||||
Sbjct: 228 aaaaattgagccataaataagtaca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
