BAC Information

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BAC

Clone NameMSMg01-058P14
Chromosome1 (Build37)
Map Location 160,836,700 - 160,836,929
singlet/doubletsinglet
Overlap genePappa2
Upstream gene6430517E21Rik, Astn1
Downstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058P14.T7 (MSMg01no058_p14.b1)MSMg01-058P14.TJ (MSMg01no058_p14.g1)
ACCAG285762AG285763
length719718
length of high quality
(start - end)
230 (76 - 305)44 (67 - 110)
definitionCHROMAT_FILE: MSMg01no058_p14.b1 PHD_FILE: MSMg01no058_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:21 2005CHROMAT_FILE: MSMg01no058_p14.g1 PHD_FILE: MSMg01no058_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCCGCTAAACGACTCACTATTCAAAGAGAGCGCGGAATTCTTCATCAT
GCAACAATTTTTTTTTAAAAACGTGATGCTTCTCTAAGACCCGAATTCTT
GTAATAATCCTGTAATCCTTGGTCCTTCGTGAGCCCATGTAGTCCACTGT
GACCCTTTGATGTTATCGGACCCAGCTTCTTCCAGAACCTCTTTGCCCTT
TATCCTCTCTAAAGCTGGCATCGCTTCATTCCCAGACTCTGCAGCTTCCA
TTCAGGGACCAAGGCTAGGATACTGCCAATAGCTCATTCACCTCAAATGT
CATTGCTGTTCTACATGAGACCTCTGATGGCTAGCCAGGGACCTGGATCA
TGCGACTCTCGCCTCTGCGCATCAATGCCTTTGTGTGTAAAACTAGATTG
GGTACGTTCCTATTTCACTGTGAATACTATATGAGAAGCCCTCTGGACCA
TGCCTATATCAAACTGACTGTTCAATGCTTCCCCCTAGATTGCCTTCCCT
GTCTCCCTCTTTTCTCCCCCTTCCAATAACCCCGCCCTCCCTATCATGAC
ACCTGTTTATTTTCATTTTGATCCCCCTCTGTCCCCATCGTATTGATTCG
CACCCCCCGCTGCGTGGTCCATCCATTGTTCTCTAATACTTTTATTCCTA
TTTAAATGCAAGCTCTTGTATCTGCGCGAATAACCCTGTAACATAACCTT
ACACGTTTACCCCTATCTC
GAGAGGCCTGGCGAACGCCTGGTTCTAACAAGGGGGGTGAACTATAGAAG
TTTCGCAAAATCCGGGTCACGTTAGAAATATCTTTCATTATGTTTCACAG
AACCAGGAAAACAAACAAAACACAACAAAACAAAACATAAATATCAAAAC
AAAACAAAACATTCCTCCCCTGGAAGCAAGAATGGTTACTATAACGGAAA
CGGTGACAACAGGACGAGATTGTAGGGAGAGAGTAATATTGTTGGTAGGA
GCTAAATTGGCGCAGCAGTTACAGATATGAGAGTGTAAGCTATCTCAAAA
ACAAACTACCCCTACTACTATTATATTTTCTAGCTATGTCACTCCTGGGC
ATATGCTTAAAATACTTTAAACACTATGAGGGTACCTGCATATCATATTT
ATCGATGCTTTATTCAAAGATAAAGGAAAATGAAATGGCCTAGATGTTCA
TTAACAGATGAATGGGTAACAAAAATTCACTATTGAATAATACAACTTAT
TTCCCAACCAAGAAAAATTAACTTATGAAATTGTGACGACCAACCCTAAA
CCCGTAAAACCTACTTAATGCTCGCCCCCCATGTTCCGCGCTGCCTAAAT
CAAAAAATCTCCTGTGACCAGCAGGTTCAAATTCCAAAATGACAACCGCA
AGCCATTACGCCACTTATAATTTGTCCAAAACGTGTCAAAACAAAAAACA
TGGTTCCCGCAAACATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_p14.b1 MSMg01no058_p14.b1 CHROMAT_FILE:
MSMg01no058_p14.b1 PHD_FILE: MSMg01no058_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:21 2005
         (230 letters)



>mm_chr1_160836500_160837129
          Length = 630

 Score =  414 bits (214), Expect = e-120
 Identities = 226/230 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcttctctaagacccgaattcttgtaataatcctgtaatccttggtccttcgtgagcc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 atgcttctctaagacccgaattcttgtaataattctgtaatccttggtccttcgtgagcc 260

                                                                       
Query: 61  catgtagtccactgtgaccctttgatgttatcggacccagcttcttccagaacctctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 catgtagtccactgtgaccctttgatgttatcggacccagcttcttccagaacctcttta 320

                                                                       
Query: 121 ccctttatcctctctaaagctggcatcgcttcattcccagactctgcagcttccattcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ccctttatcctctctaaagctggcatcgcttcattcccagactctgcagcttccatttag 380

                                                             
Query: 181 ggaccaaggctaggatactgccaatagctcattcacctcaaatgtcattg 230
           ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaccaaggctaggagactgccaatagctcattcacctcaaatgtcattg 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)