BAC Information

Click to search

BAC

Clone NameMSMg01-058P18
Chromosome1 (Build37)
Map Location 8,897,913 - 8,898,060
singlet/doubletsinglet
Overlap geneSntg1
Upstream geneLOC100039474, LOC620444, EG665007
Downstream geneLOC665103, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058P18.T7 (MSMg01no058_p18.b1)MSMg01-058P18.TJ (MSMg01no058_p18.g1)
ACCAG285770AG285771
length691705
length of high quality
(start - end)
148 (157 - 304)---
definitionCHROMAT_FILE: MSMg01no058_p18.b1 PHD_FILE: MSMg01no058_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:22 2005CHROMAT_FILE: MSMg01no058_p18.g1 PHD_FILE: MSMg01no058_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATTTGCGGCGTTATACGATCACTTTCCAAAAGGGCCGCGGAATTCCAA
TTTCCCAAAACTTGGTTTCTAAAAAAAACCTAAGTTTGTACTCAGCCAAT
TCATTCATGCCACGCAATCGAGTTTATAAAAGTGTTACTATATATGATAT
CAAGTATTAAAGTTCCTTTCCACAGATCATCTAAAGATTTAAAAAAGATA
TTAGGTTAAATGGTTTGCAATTGTTTTAAATTCCTCTTTTGTGAGCCAAT
GTCAGGATTTTGGGGAATAGATGCTCAGTTACAGTAAATGATATGGAATA
TTTGTTTCATCTTTAATTGTCCCCTGATAAATGGGTACCTTTCAACAACC
TTATATCCCTTTACATTCGCAAGGAAAAGTTGTCCAAAATCAATTAATCA
TAAGAATCATTGAATGCTGTACATATGCTAAAATTCTCCTTGAAATCCAA
ACGCCATGCTATACAGCTAATTCAAGTTCCTCTACTATTCAGCAGTACCT
CTACTCTGTAACACATCAGCAAAAGAAATCAAAATCTGTCTAGTTTCTGA
TTGCACTATTTAGCACATTTCTATAGAACAATTTCTTTTTCCACAACAGA
AAACATGCCCCGACCATTTCATCCTTTTGAACCTTTACAAAATGTGTTAA
GACTACATATGCTTTCCCCTCCCATCCTAATACACTGTTTG
TTAATGTTGTGAGGCCTGGAGAGCCGCCTGTTCCAAAACAGGGTAGGTGA
CACTATATATTTACCACACGCAATTCCTCATATCTATGTATTCCTCTTCT
TCAGACTGTCATAGAGCTTGCCCTGCAAGTGTGTGCCACTGTGCCTCCTA
ACTTTACTGTTATTTTTCATGCTCATTAAATGGTACCATTAATAGTGCGT
AATAATGTGATGACCTAACTTATATTCTGCTATGTTTAATCTAAATATTG
CCAAAAAAACCCATATTCTTGTTTAAAGATATGGTACTACCGAGTTATGG
TCTGAAACACTACGTTATTTTTTATTTTGGGATAGCATATATTAATGTTC
TGCATGTATTATCTTACTTACGACTTACCTTATTGACTAATTTAGGTGAA
ACATTCTTTTATATTATGTGATTGGCGCAGGGATTTTCATAAAACATTTT
TTGTGACCATTCATTGTTGATATCCATCCCTTTAGCCCCACCCCTCACGT
GGCAAAAATTTTAGATTTCTGCATTCCCCCCCATTCCGCTTTATATAGTT
AATTCTTCCAAAGACATTATCTCCTACCTAAATCATGTTTCTTGAAAATC
CACCCACACCCCAAAATTGTACCCATACCCCTCTTCCACCCCATACCCAT
TCACATCCCCTCTCATCCCCTTTCCACTGCAAAAAAATTCTTACGCCATA
AAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_p18.b1 MSMg01no058_p18.b1 CHROMAT_FILE:
MSMg01no058_p18.b1 PHD_FILE: MSMg01no058_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:22 2005
         (148 letters)



>mm_chr1_8897713_8898260
          Length = 548

 Score =  263 bits (136), Expect = 3e-75
 Identities = 145/148 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaagttcctttccacagatcatctaaagatttaaaaaagatattaggttaaatggttt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ttaaagttcctttccacagatcatctaaagatttagaaaagatattaggttaaatggttt 260

                                                                       
Query: 61  gcaattgttttaaattcctcttttgtgagccaatgtcaggattttggggaatagatgctc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaattgttttaaattcctcttttgtgagccaatgtcaggattttggggaatagatgctc 320

                                       
Query: 121 agttacagtaaatgatatggaatatttg 148
           |||||||| |||||||||||||||||||
Sbjct: 321 agttacaggaaatgatatggaatatttg 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)