BAC Information

Click to search

BAC

Clone NameMSMg01-058P19
Chromosome1 (Build37)
Map Location 85,261,886 - 85,262,140
singlet/doubletsinglet
Overlap geneC130026I21Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058P19.T7 (MSMg01no058_p19.b1)MSMg01-058P19.TJ (MSMg01no058_p19.g1)
ACCAG285772AG285773
length710708
length of high quality
(start - end)
240 (75 - 314)255 (78 - 332)
definitionCHROMAT_FILE: MSMg01no058_p19.b1 PHD_FILE: MSMg01no058_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:22 2005CHROMAT_FILE: MSMg01no058_p19.g1 PHD_FILE: MSMg01no058_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:22 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGCTTTTCATAACTTTCAGAAATTCAAACCACAGTTAGAAACCT
GAATTATTCTTTTCCTCTGACCCCGTCAAAGATTATGGCTGGGAATGTCT
GCTGGGTAGCTAAGTAATGACATGTACTTACACTGGTGGAGAGAAATTAT
TTAAAAAATTATTTTTATTATTTAGTGTGTGATTTTGCTGCATGCATATA
TGCATCATGTGTGTGCAGTAACCCAGGAGACCAGGAGAGGACATTGGATC
CCATAGGACTGCAGTTATATTTGGTTGTACTGTAAATGCTGGGAATTGAA
CCTGGTTTCTTTGTCCCCCCCCCCCCCCCCTCTTAATCGCTGAGGTATCT
CTCCTGTACCACCCGAGTATTCAAAAGCAATAATAGGACCGTGTGATGAC
GGGTCTGGCCTTGAGGACATTGCAAAAGACTGAGCCATAAGGCTTCCTGC
CTCCAAGTGAGGAGCTCTCTGATAAAACGTTGGAGGATACTATAGAGGGC
GCTGCTGATTGACAGCGTGCAGGTGTAGTAAGACCCATCTTCCGCAGGCA
AGCATCCAGAGAGGTGAACTCTGATTGAGCTCTGCCAGAAAAAATGAGTA
ACCTCCAATTTTCCTACTCAACACCCCAACGTGAAGCTCATAATTTATTT
TTTTCAAAAC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCAGCGAAATTCCACAGACAGTGCAAGGGTAGCAAAGA
TTAATGCAGCCATCCCTACGCCTGTCAGATTGATAACCACAATAAAAATG
TCTTCAAAGACAGAAACTGCAAACACTCAGAGACAGATACCTCCACCTGC
TTATATGAAAGGCACTGAGCCAGTGATTAACCACCCTATTTATTCCCAAA
AGACACAGCACACTGCTGGTATCACTAGTGGACTTGACCAAATGTCACAG
GAGAAATGGTGCTTTCTTATTACATCTGCAGGAGCAAAAGTAGCCCTGAC
TGAGTCCCTGTTGGCGCCACCACACACCTTCGTCTCATCTTTTCTATTTT
TATTTTGAATTATGTATGTATGAGTCTGTCTCAGTGTGCTTCCTGCACAC
AAATACAGTGACCATGGAAGCCAGAAAAGGCTGTCTGATCTGGAGTTGGC
ATGAGAGGCAACTGGAAGCCCTAGGATAGGTGCTGGGCACCCAACCCATG
CCCACTACTAGGGCAATACGAGTGCTTAACCCTGGGCCATCTCTCCTATC
GTGTGTGCGTGTGTGTGTGTGTGTGTGAGAAAATGACAGAGAGAGTGACA
TAGAGATTTATATTTACCAGAAAAAGAGATAAAAATGAGATATACATATA
GTATTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_p19.g1 MSMg01no058_p19.g1 CHROMAT_FILE:
MSMg01no058_p19.g1 PHD_FILE: MSMg01no058_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:22 2005
         (255 letters)



>mm_chr1_85261686_85262340
          Length = 655

 Score =  447 bits (231), Expect = e-130
 Identities = 249/255 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacagtgcaagggtagcaaagattaatgcagccatccctacgcctgtcagattgataac 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacagtgcaaaggtagcaaagattaatgcagccatccctacgcctgtcagattgataac 260

                                                                       
Query: 61  cacaataaaaatgtcttcaaagacagaaactgcaaacactcagagacagatacctccacc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaacaaaaatgtcttcaaagacagaaactgcaaacactcagagacagatacctccacc 320

                                                                       
Query: 121 tgcttatatgaaaggcactgagccagtgattaaccaccctatttattcccaaaagacaca 180
           | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tacttatatgaaaggcactgagccagtgattaaccacgctatttattcccaaaagacaca 380

                                                                       
Query: 181 gcacactgctggtatcactagtggacttgaccaaatgtcacaggagaaatggtgctttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacactgctggtatcactagtggacttgaccaaatgtcacaggagaaatggtgctttct 440

                          
Query: 241 tattacatctgcagg 255
           ||  |||||||||||
Sbjct: 441 taggacatctgcagg 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)