TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAAAATTACTAAGGTTGTAAGACACTAAACAAAAATAGTAACC
CCATCCCCAGTTACAAACAGGATGCCTATGTCACACTCCCTTCCCTCAAG
GCCCACGGGACATTATTAAAGAAAGAGAAAAAGAGACTACCAGAGCCAGA
GTTTATGGAGGACTGGAGCAAAACATGACAGGACACAGCACCTGTGAACT
CCAGCACAGAAGCATGCCCAAGACCTAAGCCGGCAGCATTGGAGTGGAGG
GGTAAGGGACTTACAAGCTTCTGTCCCTAGCTGAGGAGTTACTGACCGTC
GATAGCCTCCAGGGGAGGGAGAGAGAATTTTCTTTAAAAGTATGGTTCCA
TGGCAGCCTGCTAAGCTCAGTGGATAACTACATGAGGATCGAAAACTGGA
CTGAGTAGGTTTTTTTTTTTTTTTTTTAAGTGAAGACTTGGAGTTGGAAA
GGTGGTTGTCGATTATGGGGAGAATTGGGAGAAAAATAACGGGGCGCTGA
ATGTGACTATATGCATGTACTACAGCCTCAAATAATTATATTTTTAAAGA
GTTAACTCCACCTGAGGCTACTGTGGGCGAAAGAGAGAGTGTGTGAAGAA
AGACTCCTGCCTTCTGGTGCACCACCTCTCATGGCGCTATTTTCTCCCTA
GGCAT

AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAATCCACCACTGTTTTAATCACACTAAA
TACATGTGCTGGGTAACTTTGTTATCTTCAGAGTCAAGACATGCTGTAAA
ATTCAAAATGTATTTCTCTTATTTCTACCCATGCTAAAATGGCCAACAGC
CATCTCTCTGTGTCCGTGTCCACCAGAGTGCAGGGTGCAGATAGGAAGGC
ACTAGCATAGGAGAGACAGAAGGTGCCATGCTCACTCAGTCTGCATGTCT
GCTGCCCTCAGTGGAAACCAAAGAATTTTCGATGTGTGCTCCTGCTGTGG
AGATTAGGTGAGAGACGGTACCTCGTGTAACAACACATAAGAGGTTCACC
CTGCACCTACATGAAGAGCCATCAGTGCTGACTACCCAAACAATGCTCAG
TAGACTACAGGAAAATTCCGAGGCCCCCCTGAGCTAGAATCCACTACTGG
CTTACAGGTTAGCTAAGAACACCTAGAACCTACTCTATGTATGGAACTCT
GACTGGCCTCATCAGAACCTGCCCCGTTCAGATACCAGTGTCCATTCAAG
GGGCCTCATGGCTCACTGCCGGCATCCTCCCCTTCCTAAATCAGCTCACA
GGTCCCTCGATGGATATGTCTAAAAGAGCTCTAGAAAGACCCTCCCCCAA

Query= MSMg01no059_b06.g1 MSMg01no059_b06.g1 CHROMAT_FILE:
MSMg01no059_b06.g1 PHD_FILE: MSMg01no059_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:30 2005
         (497 letters)



>mm_chr1_188540191_188541087
          Length = 897

 Score =  777 bits (402), Expect = 0.0
 Identities = 470/518 (90%), Gaps = 41/518 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatccaccactgttttaatcacactaaatacatgtgctgggtaactttgttatcttcag 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aaatccaccactgtttcaatcacactaaatacatgtgctgggtaactttgttatcttcag 239

                                                                       
Query: 61  agtcaagacatgc------------tgta---------aaattcaaaatgtatttctctt 99
           |||||||||||||            ||||         ||||||||||||||||||||||
Sbjct: 240 agtcaagacatgccgagtagctccatgtatgaaaagtaaaattcaaaatgtatttctctt 299

                                                                       
Query: 100 atttctacccatgctaaaatggccaacagccatctctctgtgtccgtgtccaccagagtg 159
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 300 atttctacccatgctaaaatggccaacagccatctctctgtgtcagtgtccaccagagtg 359

                                                                       
Query: 160 cagggtgcagataggaaggcactagcataggagagacagaaggtgccatgctcactcagt 219
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 360 cagggtgcagataggaaggcactggcataggagagacagaaggtgccatgctcactcagt 419

                                                                       
Query: 220 ctgcatgtctgctgccctcagtggaaaccaaagaattttcgatgtgtgctcctgctgtgg 279
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 420 ctgcatgtctgctgccctcagtggaaaccaaagaattttcgatgtctgctcctgctgtgg 479

                                                                       
Query: 280 agattaggtgagagacggtacctcgtgtaacaacacataagaggttcaccctgcacctac 339
           |||||||||||||||||||||||||||||||                    |||||||||
Sbjct: 480 agattaggtgagagacggtacctcgtgtaac--------------------tgcacctac 519

                                                                       
Query: 340 atgaagagccatcagtgctgactacccaaacaatgctcagtagactacaggaaaattccg 399
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 atgaaaagccatcagtgctgactacccaaacaatgctcagtagactacaggaaaattccg 579

                                                                       
Query: 400 aggcccccctgagctagaatccactactggcttacaggttagctaagaacacctagaacc 459
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aggcccccctgagctagaatctactactggcttacaggttagctaagaacacctagaacc 639

                                                 
Query: 460 tactctatgtatggaactctgactggcctcatcagaac 497
           |||||||||||||||||||||||||||||||| |||||
Sbjct: 640 tactctatgtatggaactctgactggcctcattagaac 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)