NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTTTTACTTGCTTTTTATTAAGTGTGTTAACAATGTACTTCTA
TAATGCCCCAATAGCTCAGTTCCTAAGTGTAGCTTTTATGACACTATAAA
ATTAGAAGGTGGGGAAATTTTGTAAAGTTTGGTATTATAACTCTGTCATA
GTCCTCCCAAGCCTCACATTATCTCTAACTCCTTAACTGTAAACTCCACT
GAAATATTATATAACAACGATGTTATGAATGTCACATCATCTGTTCACAA
TTTTTGTGAAATCATTTCTTTTAACCAGATATGAAACAGAAGTTATTAAG
CCCTTTCTAGAAAAATATTGATAAAATCTACTTTTTTTTGTCTGCCATTT
AAGTTATCAATGTGGAGTGAAAAGCCCCTTCCATTTCACTATCCTTGAAA
ATATACAGATCTGAATTAAACTGCAAGTATGGTTTGCTATACCAAGATGC
ATATGAGGACAGTGTACCCAAACTCTTGGGCTGTGGTTCTTTCTTAAACA
GAAAACAAACTTTAAAATAAAGGCTTAAGACGTAGCTGAAAATATATTTG
AAATGATACACTGCTTTCCTGGTGTGTCAATTGATTATTTTCCCCATTTT
TTTTTCCAGAAGGTAAATTTCTGGTCCTGTATAGGTCCTTGCAGAACAGC
AT

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGA
GCAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATC
AAAAACTCAGGAGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTCCTGGAGGATCCC
GCAATACCTCTCCTGGGCATATATTCAGAAGATGTTTCAACCTGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAAATGAATTT
ATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAGAAACTTAGGGTACCCAAGATATAAGATACAACTTGCT
A

Query= MSMg01no059_b22.b1 MSMg01no059_b22.b1 CHROMAT_FILE:
MSMg01no059_b22.b1 PHD_FILE: MSMg01no059_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:33 2005
         (649 letters)



>mm_chr1_131853651_131854696
          Length = 1046

 Score = 1135 bits (587), Expect = 0.0
 Identities = 630/645 (97%), Gaps = 3/645 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttttacttgctttttattaagtgtgttaacaatgtacttctataatgcccca 64
           ||||||||||||||||| |||||| ||||||||||||||||||||||||| | || ||||
Sbjct: 205 gaattcacttttacttggtttttactaagtgtgttaacaatgtacttctagattgtccca 264

                                                                       
Query: 65  atagctcagttcctaagtgtagcttttatgacactataaaattagaaggtggggaaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagctcagttcctaagtgtagcttttatgacactataaaattagaaggtggggaaattt 324

                                                                       
Query: 125 tgtaaagtttggtattataactctgtcatagtcctcccaagcctcacattatctctaact 184
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 325 tgtaaagtttggtattataactctgtcattgtcctccgaagcctcacattatctctaact 384

                                                                       
Query: 185 ccttaactgtaaactccactgaaatattatataacaacgatgttatgaatgtcacatcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccttaactgtaaactccactgaaatattatataacaacgatgttatgaatgtcacatcat 444

                                                                       
Query: 245 ctgttcacaatttttgtgaaatcatttcttttaaccagatatgaaacagaagttattaag 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgttcacagtttttgtgaaatcatttcttttaaccagatatgaaacagaagttattaag 504

                                                                       
Query: 305 ccctttctagaaaaatattgataaaatctacttttttttgtctgccatttaagttatcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccctttctagaaaaatattgataaaatctacttttttttgtctgccatttaagttatcaa 564

                                                                       
Query: 365 tgtggagtgaaaagccccttccatttcactatccttgaaaatatacagatctgaattaaa 424
           ||||||||||||||||||| |||||||| |  ||||||||||||||||||||||||||||
Sbjct: 565 tgtggagtgaaaagcccctcccatttcagt--ccttgaaaatatacagatctgaattaaa 622

                                                                       
Query: 425 ctgcaagtatggtttgctataccaagatgcatatgaggacagtgtacccaaactcttggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgcaagtatggtttgctataccaagatgcatatgaggacagtgtacccaaactcttggg 682

                                                                       
Query: 485 ctgtggttctttcttaaacagaaaacaaactttaaaataaaggcttaagacgtagctgaa 544
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 683 gtgtggttctttcttaaacagaaaacaaactttaaaataaaggcttaagacatagctgaa 742

                                                                       
Query: 545 aatatatttgaaatgatacactgctttcctggtgtgtcaattgattattttccccatttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aatatatttgaaatgatacactgctttcctggtgtgtcaattgattattttccccatttt 802

                                                        
Query: 605 tttttccagaaggtaaatttctggtcctgtataggtccttgcaga 649
           |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tttt-ccagaaggtaaatttctggtcctgtataggtccttgcaga 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1046
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1036
Effective search space:   662004
Effective search space used:   662004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)