BAC Information

Click to search

BAC

Clone NameMSMg01-059C13
Chromosome1 (Build37)
Map Location 108,669,423 - 108,669,981
singlet/doubletsinglet
Overlap geneVps4b
Upstream geneTnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1
Downstream geneSerpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059C13.T7 (MSMg01no059_c13.b1)MSMg01-059C13.TJ (MSMg01no059_c13.g1)
ACCAG285903AG285904
length739740
length of high quality
(start - end)
591 (47 - 637)340 (74 - 413)
definitionCHROMAT_FILE: MSMg01no059_c13.b1 PHD_FILE: MSMg01no059_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:35 2005CHROMAT_FILE: MSMg01no059_c13.g1 PHD_FILE: MSMg01no059_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTAACTGTATGCATCGAATTCTGAAAGTCAAGACTATTAGCATT
CAATAATAGTAAAACCCTCTACATTATTCTAATCCTTCTGATGAAAACTA
TAAACTGCATTTTGTAGTAGTATCACTATATTCCTTTTTAAATTGTACTC
CTTATTACTACAAAAATATATTTCTATAAGTCACTTGGTTGTACTTAAAT
GGAACAGCAATGAGAATATTTTTTAAAGTTAAAACTAAGAGTGAAATGGT
GAAAATACACTAACATCAGAAAGTCATTAAAATGAACGTTTCCTATAAAA
TTACATCACAAATGAAAAAAGGAACCACTGTAAGTTACTCTGAATTCTTC
AAATCAGGACAGAACATAACCACTTACAACAATAATCTCATCTGGAAGTA
CTGCAGTAAGCGGGACTTCTGAGTACTCAGACAAGCACTGAGTCTGTGTC
CCTATACAGACTGACACACACACACACACACACACACACTCACACACAGA
GCAGACTATGTCTGCTCACTAGCACATCAGTCTCCTCTCTTAATGCTCCT
GTCCAACCTACCACAAAGCACTCTGAAAACTGGCAGCTAAGGCCAAAGCT
GTTTGACACTGGGTGTTCATCAGTAACCAAACAGATTTCTGCAGCACCAC
CGTTCTATAAAGATACACCTTACAAAATAAACCGTGTAG
ATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGAAAGTCTTTAATTTCTTCCCTGAC
CCTGTGGTCATTGAATAGAGAGTTGTTCAGTTTCCATGAGTATGTGGGCT
TTCTGTTGTTGTTGAAGTCTAGCCTTAGTTCATGATGATCTGATAGAATG
CAAGGGATTATTTCAATCTTCTTGTATCTGTTGAGTCTGATTATATGGTC
AGTTTTGGAGAAGGTTCAGTGAGGTGCTGAGAAGAAAGTACATTGTTTTG
GGGTGAAGTGTTCTATAGATATCTGTTAAATTCTTCCGGTTCATAACTTC
TGTTAGTTTGATTGTGTCTCTGTTTAGTTTCTGTTTCAATGACCTGTCCA
TTGGTGAGAGAGCACCCCCCCAGTCTCACATTATTATTGTGAGGGGTTCA
ATGTGTGTTTTATCTTTAGTAACGTTCCTTTGATGATTGTATTTGCCCTT
GCTTGTATGCCACTCACCGCTCTCATTTGACATCATTTCTTGTTGCCCTT
TTTCCTCTCATAATTTTTTTTTACCCCTCTCCTTTTCTTCTTTACTTATT
CCATATCCCCCCTTATTTGTCCTCTTTTTTTTGTCTTTATGTTTTTATTT
TTCTTGTTCTTTTCATCTCCCCCTTCTCCTTTTTTTTCCCCATTTTCCTT
TCCACTTCTCTTTTTTTCCCCTTCCTAACACCCCCGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_c13.b1 MSMg01no059_c13.b1 CHROMAT_FILE:
MSMg01no059_c13.b1 PHD_FILE: MSMg01no059_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:35 2005
         (591 letters)



>mm_chr1_108669221_108670209
          Length = 989

 Score =  984 bits (509), Expect = 0.0
 Identities = 556/589 (94%), Gaps = 30/589 (5%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattctgtaactgtatgcatcgaattctgaaagtcaagactattagcattcaataata 62
           ||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctgtaactgaa-gtatcgaattctgaaagtcaagactattagcattcaataata 261

                                                                       
Query: 63  gtaaaaccctctacattattctaatccttctgatgaaaactataaactgcattttgtagt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtaaaaccctctacattattctaatccttctgatgaaaactataaactgcattttgtagt 321

                                                                       
Query: 123 agtatcactatattcctttttaaattgtactccttattactacaaaaatatatttctata 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agtatcactatattcctttttaaattgtactccttattactacaaaaatatatttctata 381

                                                                       
Query: 183 agtcacttggttgtacttaaatggaacagcaatgagaatattttttaaagttaaaactaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agtcacttggttgtacttaaatggaacagcaatgagaatattttttaaagttaaaactaa 441

                                                                       
Query: 243 gagtgaaatggtgaaaatacactaacatcagaaagtcattaaaatgaacgtttcctataa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gagtgaaatggtgaaaatacactaacatcagaaagtcattaaaatgaacgtttcctataa 501

                                                                       
Query: 303 aattacatcacaaatgaaaaaaggaaccactgtaagttactctgaattcttcaaatcagg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aattacatcacaaatgaaaaaaggaaccactgtaagttactctgaattcttcaaatcagg 561

                                                                       
Query: 363 acagaacataaccacttacaacaataatctcatctggaagtactgcagtaagcgggactt 422
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acagaacataaa-acttacaacaataatctcatctggaagtactgcagtaagcgggactt 620

                                                                       
Query: 423 ctgagtactcagacaagcactgagtctgtgtccctatacagactgacacacacacacaca 482
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
Sbjct: 621 ctgagtactcagacaagcactgagtctgtgtccctatacagac--acacacacaca---- 674

                                                                       
Query: 483 cacacacacactcacacacagagcagactatgtctgctcactagcacatcagtctcctct 542
                                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ----------------------gcagactatgtctgctcactagcacatcagtctcctct 712

                                                            
Query: 543 cttaatgctcctgtccaacctaccacaaagcactctgaaaactggcagc 591
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cttaatgctcctgtccaacctaccacaaagcactctgaaaactggcagc 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 989
Length adjustment: 10
Effective length of query: 581
Effective length of database: 979
Effective search space:   568799
Effective search space used:   568799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)