BAC Information

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BAC

Clone NameMSMg01-059D10
Chromosome1 (Build37)
Map Location 87,464,173 - 87,464,605
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059D10.T7 (MSMg01no059_d10.b1)MSMg01-059D10.TJ (MSMg01no059_d10.g1)
ACCAG285945AG285946
length684697
length of high quality
(start - end)
475 (46 - 520)433 (69 - 501)
definitionCHROMAT_FILE: MSMg01no059_d10.b1 PHD_FILE: MSMg01no059_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:40 2005CHROMAT_FILE: MSMg01no059_d10.g1 PHD_FILE: MSMg01no059_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:40 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGG
AATTCTGTTCTTACCCCAGAAATACAAATAAGAGGCAACTGCCTCTTGTT
GCTATGAAATACTGCACCCAAGAATTAAGGACGGTTTCATCGGCTGAACA
GTTCTAGCTTGTTTGAGAGACCCAGACTGAGATACTCTTAGCATGCTGGG
GAAGGTAGAGGTACTGGCCTTTAAAGTAATTGTTGGACAGGTTATATCGT
AGCTTCCTTCTAGAAAATGGAGTGGGCAAAACATCCTGGGGATTCAGAAT
TCAAACAAGCTAGACAATAATGCCAAGGACAAATTATACGATAGCCTGGA
GTTCAGATTTTTAGTGAGCTTTGAAGCCAGAGTTCAGTGATATGTGGCCT
GTTGAAGTCTATGCTAATAGCATACTAACTTCTCCAACTTAAAGCAGTCA
ACATTCAAGGAGGATGTAGCTCTACACACAATACAAGAGCATGGTGGAAG
GAAGACACAGGCTGAAAACCAGAAAAGAAGGCAGTAGAGGAGGAAATGAG
AGGTGATGTTAAGGATAACAACCCAATTTAGGCGCCATCAGTAAGATGCT
GTGTGTAACACTCACATGGTGAGCACTCACCTCTTTTCTTTTGCGATGTA
TCCGTGGAGGATTTGGTAGAAAATTTCTCCGCCC
CATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATATTGCATCCTTATATTTTGCATAGTTGAGA
ATATATTGAACTCATGTTGCCAAACTCATTCTATGAGACAGTTTTATTCA
TATCCTTCACCTGTTTGACTATATTTTCTTGTATTTCTTTATGTTTATTT
GCTTCCTCTTTTAATGCTTTTACTTGCTTGAATGTATTTTCATGTCTTTC
CTTAAGGAATTTATTCATGTCTTCTTTAAAGGCTGTTATTAGCTTCATTA
GATTGAATTTAAAATCCTCTTCTTGTGCTTCAGTTTCATTAGGATATCCA
GGGTTTGTTGTAGAAGGATAGCTGTGCACAACTCACCTCTGTAGGCTGTC
CCAGATGGATCAATTGGGATAGTGGGCAACTCTTACTGGAATGGGATTTG
TTGGGCAGGGTTCCAAGATCATTAGTTTTGGGGTTCTTGAAGGTTTCCAC
GGTGAAGTAGGATTCTCTTTGTTTCCACAAGACTCCTCTGGCCGAACATT
GAGTCCAGAGCTAGACAATGTACCTCAGGGGACCATGTGCCACCCCCCTG
AGATTGTTCCTTATAGGCGAAACCGACCCAAAGACTTTGTGTTATCGTAG
AGTGATTATACCCCAAGATTTCCCATTATTACCCCTCATGTTGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_d10.g1 MSMg01no059_d10.g1 CHROMAT_FILE:
MSMg01no059_d10.g1 PHD_FILE: MSMg01no059_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:40 2005
         (433 letters)



>mm_chr1_87463973_87464805
          Length = 833

 Score =  791 bits (409), Expect = 0.0
 Identities = 427/433 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattgcatccttatattttgcatagttgagaatatattgaactcatgttgccaaactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattgcatccttatattttgcatagttgagaatatattgaactcatgttgccaaactca 260

                                                                       
Query: 61  ttctatgagacagttttattcatatccttcacctgtttgactatattttcttgtatttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctatgagacagttttattcatatccttcacctgtttgactatattttcttgtatttct 320

                                                                       
Query: 121 ttatgtttatttgcttcctcttttaatgcttttacttgcttgaatgtattttcatgtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ttatgtttatttgcttcctcttttaatgcttttacttgcttgaatgtattttcatgtatt 380

                                                                       
Query: 181 tccttaaggaatttattcatgtcttctttaaaggctgttattagcttcattagattgaat 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tccttaaggaatttattcatgtcttctttaaaggcttttattagcttcattagattgaat 440

                                                                       
Query: 241 ttaaaatcctcttcttgtgcttcagtttcattaggatatccagggtttgttgtagaagga 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaagtcctcttcttgtgcttcagtttcattaggatatccagggtttgttgtagaagga 500

                                                                       
Query: 301 tagctgtgcacaactcacctctgtaggctgtcccagatggatcaattgggatagtgggca 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagctgcgcacaactcacctctgtaggctgtcccagatggatcaattgggatagtgggca 560

                                                                       
Query: 361 actcttactggaatgggatttgttgggcagggttccaagatcattagttttggggttctt 420
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 actcttactggaatgggattggttgggcagggttccaagatcattagttttgaggttctt 620

                        
Query: 421 gaaggtttccacg 433
           |||||||||||||
Sbjct: 621 gaaggtttccacg 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)