BAC Information

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BAC

Clone NameMSMg01-059D19
Chromosome1 (Build37)
Map Location 14,611,203 - 14,611,777
singlet/doubletsinglet
Overlap genenone
Upstream geneLactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1, LOC665391
Downstream geneMsc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959, Kcnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059D19.T7 (MSMg01no059_d19.b1)MSMg01-059D19.TJ (MSMg01no059_d19.g1)
ACCAG285963AG285964
length716709
length of high quality
(start - end)
619 (66 - 684)573 (70 - 642)
definitionCHROMAT_FILE: MSMg01no059_d19.b1 PHD_FILE: MSMg01no059_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:41 2005CHROMAT_FILE: MSMg01no059_d19.g1 PHD_FILE: MSMg01no059_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGAGCCGCGGAAT
TCAAAGCCCATACCTAAATATAGTAAAAACAATATACAGCAAACCAGTAG
CCAACATCAAATGAAATGGAGAGAAACTTGAAGCAATCCCACTAAAATCA
GGGAGTAGACAAGGCTGCCCTCTTTTTCCCTATCTATTCAATATAGTGCT
TGAAGTTCTAGCTATAGCAATTGGACAACAAAAGGAGGTCAAAGGGATAC
AAAATGGAAAGGAAGAAGTCAATATATCACTACTTGCAGATGACATGATA
GTATACTTATGTGACCCTAAATACTTCACCAGAGAACTCTTACAACTGAC
AAACAACTTCAGCAATGTGGCAGGATATAAAATTAACTCCATCCAATGAA
TAGCCTTCCTATACTCAAAGGATAAACAGACTGAGAAAGAAATTAGGGAA
ACAACACCCTTCACAATAGTCATAAACAATGTAACATATAATGGTGTGAC
TGTAATCAAACAAGTGAGAGATCTGTATGACAAGAACTTCAGGTCTCTGG
AGAAATAAATTGAAGAAGATCTCAGAAGATGGAAAAATCTCACATGCTCA
TGGATTGGCAAGATTAATATTGTAAAAATGGTCATCTTGCAAAAAGCAAT
CTACAGATTCGATGAAATCCCCACCAAAATTCCAACTCAATTCTTCATAG
AGTTAGAAAGAGAAAT
TGAAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTAGACCACTCCTGCCTGGGAGACTCACCA
GCACGTAGTAAGCAAAAGCTCCTTTGGGAGATTTACTGTTATCACTATCC
TCCTGCCAACTGATCTATCTGCCCCTTAGGCCCACAAGAGTTTTTCAGAA
ATTGTTATACCTATGAACAGCAACATTAGTGGTGCCATGCCCTATGATCG
TGAAGCTTGGATGCTGGAGAGCCAGGACAGTTCGGGAGAGATGCATCAGC
AGCAAAGGATTCCTGAAGTATAAACAGCAAAGTGCAACCGGAGGCCAAGG
GCAGAGCATGAGCCACCCCTCTTTGTGAGTTACTCCAACATTAAAGGAGT
CCCTGCCCCATAGAAATATTTATCCGAGAGGGAAAAAAAATGAACATTTT
ATGTTTCATCTGTTTTGACAAATACATAATTACCCCAGAGCCTGGCAAAC
GTTTTCCTTGTTGTCTCAAATGAAAACTGACTAAATGTGACATGAGTTTA
GAATTAATCCCTACTGTAGCTAGGATTTGCTGCAAAGCAGCTGCTTCTTA
TTGTCATTGCTTGGGGATCATGTCCTGATTATTACAGACTTATTAAGTGT
CTTCAGGAGGCTATCAGGAAAGCTGTTTGAGGCTGTCTGTAAAAGTTCCT
GAATTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_d19.g1 MSMg01no059_d19.g1 CHROMAT_FILE:
MSMg01no059_d19.g1 PHD_FILE: MSMg01no059_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:41 2005
         (573 letters)



>mm_chr1_14611003_14611977
          Length = 975

 Score = 1093 bits (565), Expect = 0.0
 Identities = 572/575 (99%), Gaps = 2/575 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actagaccactcctgcctgggagactcaccagcacgtagtaagcaaaagctcctttggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 actagaccactcctgcctgggagactcaccagcacgtagtaagcaaaagctcctttggga 716

                                                                       
Query: 61  gatttactgttatcactatcctcctgccaactgatctatctgccccttaggcccacaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gatttactgttatcactatcctcctgccaactgatctatctgccccttaggcccacaaga 656

                                                                       
Query: 121 gtttttcagaaattgttatacctatgaacagcaacattagtggtgccatgccctatgatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gtttttcagaaattgttatacctatgaacagcaacattagtggtgccatgccctatgatc 596

                                                                       
Query: 181 gtgaagcttggatgctggagagccaggacagttcgggagagatgcatcagcagcaaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gtgaagcttggatgctggagagccaggacagttcgggagagatgcatcagcagcaaagga 536

                                                                       
Query: 241 ttcctgaagtataaacagcaaagtgcaaccggaggccaagggcagagcatgagccacccc 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttcctgaagtagaaacagcaaagtgcaaccggaggccaagggcagagcatgagccacccc 476

                                                                       
Query: 301 tctttgtgagttactccaacattaaaggagtccctgccccatagaaatatttatccgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tctttgtgagttactccaacattaaaggagtccctgccccatagaaatatttatccgaga 416

                                                                       
Query: 361 ggg--aaaaaaaatgaacattttatgtttcatctgttttgacaaatacataattacccca 418
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ggggaaaaaaaaatgaacattttatgtttcatctgttttgacaaatacataattacccca 356

                                                                       
Query: 419 gagcctggcaaacgttttccttgttgtctcaaatgaaaactgactaaatgtgacatgagt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gagcctggcaaacgttttccttgttgtctcaaatgaaaactgactaaatgtgacatgagt 296

                                                                       
Query: 479 ttagaattaatccctactgtagctaggatttgctgcaaagcagctgcttcttattgtcat 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttagaattaatccctactgtagctaggatttgctgcaaagcagctgcttcttattgtcat 236

                                              
Query: 539 tgcttggggatcatgtcctgattattacagactta 573
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 tgcttggggatcatgtcctgattattacagactta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 975
Length adjustment: 10
Effective length of query: 563
Effective length of database: 965
Effective search space:   543295
Effective search space used:   543295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)