XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAATCCGCGGATTCT
CCCTTTATTCCCGGTCTAAAGAATCTTAGGCAGGTGCACAAACATGTTGC
TTGTCACCAGGAGTAGACACCTCTAACTTCCCGGTAGAAAATTATCAGGC
CTGATGCTGTGATGTACAGACAAATACATGGGAAGGTTGGAGCAGGGAGT
CCTGTCTGCCATAGATGCTTCGTGTGTGATTCCAGAATTGTAAAAAGTTG
AAGCATGGATGTTGCTGATGGACTAACAAAGAGAGAGATTGCAGCTTGCA
CTGTTCCCATTTTTCTAGTATGCATTGAGGAGTTACTGGACATCAAGAGT
CCCAGTTGAATGGACCACAAGGAACTTGGAATGGAAGGCAAAGCTGGTGG
AATGTGCTCTGCTCCTATTAAAGAACAGCCACTGGGGCATTCCTCTGGAG
GCCTCTGAACAAGCTTGGTGACACCCAATGTTATTCGAATCCACCCCATG
TGTGTATTAATTTTCTCAGTGAAGATTTTTAATTTTGGGAAAGCTATAGA
TTCATTTGCAAGAAATGATATAGATTCCTTTATATACTCAGCATCCCAGA
GTGCTGAACTTACAGTTGTATAATTATAGTATGATCTCACATATGGAGTG
TTGACATCCATGCATCCAGGGCACAGAGCGTTTTCTTTTCTCTCAATGTT
CTTGCGCCATTTTTTACAGCCATCTCTGCTG

TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGCTCCTCCTGTACCATGTCTGCCTGGAT
GCTGCCATGTTCACACCTTGATGATAATGAACTGAACCTCTGAACCTGTA
AGCTGGACCCAATTAAACATTGTCCTTAGAAGAGTTGCCTTGGGCATAGT
GTCTGTTCACATCAGTAAAACCCTAACTGAGACAAGGATGTACTCCCTAG
TTGCTGACAGGATTGTCGCCATAGATCTGTCTATAGAAAACTCCAGTCAG
CCATTACTCTACATTCAGCTATTAAGATCGCTTTTCCAGCTTCTGGCTAT
CACAAATAAGGCCACCAAAACAACCCAGACATCCCATGACAGAAGAATAG
ATACAGAAAATGCCCCTCATTTACACAAGGGAATACTACTAAGCTACTAA
GAATGATATCCTGAGTTTTGCAGGTAAATGGATGGAACTAGAAAATATTA
TCCTGAGTGAGGTAACTCAGATCCAAAAGGACATGCATAGTATGTACTCA
CTAATAAGTGGATATTAGCCAAAAATAGATAGATAGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGTACAGAATACCCAAGA
TATGGTCCACAGAACTCAAAATGGCCAACAAGCTTAAGTACCCAAGTGAG
GATGCATCAGTCCTTCTTGTGAGGGAGAAGAA

Query= MSMg01no059_e16.b1 MSMg01no059_e16.b1 CHROMAT_FILE:
MSMg01no059_e16.b1 PHD_FILE: MSMg01no059_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:45 2005
         (567 letters)



>mm_chr1_23559352_23560319
          Length = 968

 Score =  973 bits (503), Expect = 0.0
 Identities = 540/555 (97%), Gaps = 7/555 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctccctttattccc---ggtctaaaga-atcttaggcaggtgcacaaacatgttgctt 56
           |||||||||||   ||   |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 768 ttctcccttta---ccatgggtctaaagagatcttaggcaggtgcacaaacatgttgctt 712

                                                                       
Query: 57  gtcaccaggagtagacacctctaacttcccggtagaaaattatcaggcctgatgctgtga 116
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 711 gtcaccaggagtagacacctctaacttcccagtagaaaattatcaggcctgatgctgtga 652

                                                                       
Query: 117 tgtacagacaaatacatgggaaggttggagcagggagtcctgtctgccatagatgcttcg 176
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tgtacagacaaatacataggaaggttggagcagggagtcctgtctgccatagatgcttcg 592

                                                                       
Query: 177 tgtgtgattccagaattgtaaaaagttgaagcatggatgttgctgatggactaacaaaga 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 591 tgtgtgattccagaattgtaaaaagttgaagcatggatgttgctgatggactaacaaagg 532

                                                                       
Query: 237 gagagattgcagcttgcactgttcccatttttctagtatgcattgaggagttactggaca 296
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 531 gagagattgcagcttgcactgttcccatttttctaggaggcattgaggagttactggaca 472

                                                                       
Query: 297 tcaagagtcccagttgaatggaccacaaggaacttggaatggaaggcaaagctggtggaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tcaagagtcccagttgaatggaccacaaggaacttggaatggaaggcaaagctggtggaa 412

                                                                       
Query: 357 tgtgctctgctcctattaaagaacagccactggggcattcctctggaggcctctgaacaa 416
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgtgctctgcttctattaaagaacagccactggggcattcctctggaggcctctgaacaa 352

                                                                       
Query: 417 gcttggtgacacccaatgttattcgaatccaccccatgtgtgtattaattttctcagtga 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gcttggtgacacccaatgttattcgaatccaccccatgtgtgtattaattttctcagtga 292

                                                                       
Query: 477 agatttttaattttgggaaagctatagattcatttgcaagaaatgatatagattccttta 536
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 291 agatttttaattttgggaaagttatagattcatttgcaagaaatgatagagattccttta 232

                          
Query: 537 tatactcagcatccc 551
           |||||||||||||||
Sbjct: 231 tatactcagcatccc 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space:   533606
Effective search space used:   533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)