BAC Information

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BAC

Clone NameMSMg01-059H08
Chromosome1 (Build37)
Map Location 78,345,414 - 78,345,786
singlet/doubletsinglet
Overlap geneSgpp2
Upstream geneEpha4, LOC100039330, Pax3, LOC100039210, LOC100039382
Downstream geneFarsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059H08.T7 (MSMg01no059_h08.b1)MSMg01-059H08.TJ (MSMg01no059_h08.g1)
ACCAG286131AG286132
length705709
length of high quality
(start - end)
376 (72 - 447)442 (73 - 514)
definitionCHROMAT_FILE: MSMg01no059_h08.b1 PHD_FILE: MSMg01no059_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:58 2005CHROMAT_FILE: MSMg01no059_h08.g1 PHD_FILE: MSMg01no059_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
GAATTCCAGGATAGTCACGGCTACACAGAGAAACCACTTCTTGAAAACAA
AACAAAAACGAAACAAAAGTCCTCAGACCTAGTAAAAGGCTCGGGGCATG
TTAAGTAATGCTACAACATTTAAGATGAACACAGTCACAGTTGAGTGAAA
ACACCTATATCCACCCAGGGCTTTGCAGTGGGAGGGGACAGCAGACATGT
TCAAAGAGGCTGAACCTGAGGGGTGGGACAATGGGTAAGTTGGCTTTTGC
TTTTGACTTTTCAGATGGTTCCAAGTGAAATGTGTTCATCAGAAAAGCAA
GGGCTATATCAGATACCAGGGAAGAAAAGGAAATATAAAAAACTCAAGCT
TTCGTCTCAAAAATAAAGTTAAAAAGATAAGTCACGGGGCACAAAGAAAC
CAGAGGGTCAGCAACGGACCGGGTGGGGAGCCCATTGTTTCTTCATTGCG
TGCTGTTTCTTTAGTGCTCCTTTTATGTGTGTATACACAACTTCCAAGCT
CTTCCTGAGTTTATTTTTGTGACTGGCGATTTTAAGTTCCATTAGACCCA
CCCTTCTAGTGCGGAACAAAATTTGAAACTGTGCATGAAGCTTGAAGGGT
AACCTTACCGGCCTTTGACGGTCAAAAGACTTAACAGTGTTTATGCCCAA
CTCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTCGAGGCATGGAAGAACATCCGAGA
TGGGGCAGGATGGCCGGTCCAGACCTCGGTCGAGATAGACGAAGGATTTC
CTCTGACTCGTCCCCAGTGGGATTATAACATGGCACAGGGTAGGGAACGG
CTGTCCAATTATCGTCGGGCACTAGTTGCGGGTCTCAGAGGGGCCGCTCG
TAGGCCCACAAATTTGCCTAAGGTAAGAGAAGTTATGCAGGGGCCAGCTG
AGCCCCCCCCCTCAGTTTTTTTAGAGAGACTCATGGAAGCTTATAGGAGG
TATAGCCCGTTTGACCCTACGTCAGAGGGACAGTGGGCTTCAGTGATTAT
GGCCTACATAGGACAGTCAGCTTCTGATATTAGAAGGAAGCTGCATCGTT
TTGAAGGATTGCAAGATTATACTATAAGGAATGTGGTTAGAGAGGCTGAT
AAAGTGTATGACATGAGAGAAACAGAGGAGGAATAGTTAGAACGAGAACA
TACTGAGAGAATAGAAGATGAACATTATAGAGAGAGGAGGCAGCTATAGG
CTCCTGATTCGAAATTCTGGGCCCCGGTGTTAAAATAGAGTAAGGGGTAG
GTTTTAGAACCGTACTGGCAATCCGATAGATGAAAAACTTTTCTGGGTCC
TTGGTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_h08.b1 MSMg01no059_h08.b1 CHROMAT_FILE:
MSMg01no059_h08.b1 PHD_FILE: MSMg01no059_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:58 2005
         (376 letters)



>mm_chr1_78345214_78345986
          Length = 773

 Score =  665 bits (344), Expect = 0.0
 Identities = 367/376 (97%), Gaps = 3/376 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacacagagaaaccacttcttgaaaacaaaacaaaaacgaaacaaaagtcctcagaccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 tacacagagaaaccacttcttgaaaacaaaacaaaaacgaaacaaaagtcctcagacctt 260

                                                                       
Query: 61  gtaaaaggctcggggcatgttaagtaatgctacaacatttaagatgaacacagtcacagt 120
           |||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||
Sbjct: 261 gtaaaaggctcggggcatgttaagtaatgct---acatttaaggtgaacacagtcacagt 317

                                                                       
Query: 121 tgagtgaaaacacctatatccacccagggctttgcagtgggaggggacagcagacatgtt 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgagtgaaaacacctatacccacccagggctttgcagtgggaggggacagcagacatgtt 377

                                                                       
Query: 181 caaagaggctgaacctgaggggtgggacaatgggtaagttggcttttgcttttgactttt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 378 caaagaggctgaacctgaggggtgggacaatgggtaagttggctttcgcttttgactttt 437

                                                                       
Query: 241 cagatggttccaagtgaaatgtgttcatcagaaaagcaagggctatatcagataccaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 438 cagatggttccaagtgaaatgtgttcatcagaaaagcaagggctaaatcagataccaggg 497

                                                                       
Query: 301 aagaaaaggaaatataaaaaactcaagctttcgtctcaaaaataaagttaaaaagataag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 498 aagaaaaggaaatataaaaaactcaagctttcgtctcaaaaataaagttaaaacgataag 557

                           
Query: 361 tcacggggcacaaaga 376
           ||||||||||||||||
Sbjct: 558 tcacggggcacaaaga 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 773
Length adjustment: 9
Effective length of query: 367
Effective length of database: 764
Effective search space:   280388
Effective search space used:   280388
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)