Query= MSMg01no059_h23.b1 MSMg01no059_h23.b1 CHROMAT_FILE:
MSMg01no059_h23.b1 PHD_FILE: MSMg01no059_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:01 2005
(636 letters)
>mm_chr1_97349699_97350733
Length = 1035
Score = 1123 bits (581), Expect = 0.0
Identities = 624/639 (97%), Gaps = 7/639 (1%)
Strand = Plus / Plus
Query: 1 tatgagaatac-tgtgagaataatacttccaaaaagcaaaataaaataatatttttgcat 59
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgagaatacatgtgagaataatacttccaaaaagcaaaataaaataatatttttgcat 260
Query: 60 tttgcttgattcactcatgtttgtctttgtaatttaataactcaagtctccttgttacaa 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tttgcttgattcactcatgtttgtctttgaaatttaataactcaagtctccttgttacaa 320
Query: 120 gtactttacatgttcagaaacatctataattttatgcttactgtttatttagtactttct 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 gtactttacatgttcagaaacatctataattttatgcttactgtttatttaatactttct 380
Query: 180 agttctctctgtctactccccatacactccaccctccccatctcaatctctctacattgc 239
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 agttctctttgtctactccccatacactccaccctccccatctcaatctctctacaatgc 440
Query: 240 tctgctgggctgacacttacagtgacctcctgcttaaggtttccaagtg-ccttgattgc 298
|||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 441 tctgctgggctgacacttgcagtgacctcctgcttaaggtttccaagtgtcct-gattgc 499
Query: 299 agattccagctgcgaagacaggttttgctttttaaagtctagagctgtaaaaagcagatg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agattccagctgcgaagacaggttttgctttttaaagtctagagctgtaaaaagcagatg 559
Query: 359 tcgcaaat-ttagtttttctgttttattacaatatgaatcactttgataacatatacatt 417
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcgcaaatctt-gtttttctgttttattacaatatgaatcactttgataacatatacatt 618
Query: 418 tattagtatataaccttaaggatatatcttatgcatgcttacatgtgtagtagcaataac 477
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 619 tattagtatataaccttaaggatatatcttatgcatgcttac--gtgtagtagcaataac 676
Query: 478 atttgcaaaaaatgaatgcatagatttcttttgccttactttgacatacttagttcttaa 537
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 677 atttgcaaaaaatgaatgcatagatttcttttgccttgctttgacatacttagttcttaa 736
Query: 538 caatctcttaatttggcctggtggtgagacataattttgagaatgatatacaacttggag 597
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 737 caatctcttaatttggcctggtggtgagacataattttgagaatgacatacaacttggag 796
Query: 598 gatgagttctcatcccatgacaatgtcattacccctgtg 636
||||| |||||||||||||||||||||||||||||||||
Sbjct: 797 gatgaattctcatcccatgacaatgtcattacccctgtg 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1035
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1025
Effective search space: 641650
Effective search space used: 641650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_h23.g1 MSMg01no059_h23.g1 CHROMAT_FILE:
MSMg01no059_h23.g1 PHD_FILE: MSMg01no059_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:01 2005
(635 letters)
>mm_chr1_97480675_97481709
Length = 1035
Score = 1197 bits (619), Expect = 0.0
Identities = 631/635 (99%)
Strand = Plus / Minus
Query: 1 caagagcaaacttcaataaaattgttgaataccagtatacacagttagttgtttattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 caagagcaaacttcaataaaattgttgaataccagtatacacagttagttgtttattttg 623
Query: 61 cttccacattacaaacctattgcagcttactgatttttgatacattcaccaatgccaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cttccacattacaaacctattgcagcttactgatttttgatacattcaccaatgccaaat 563
Query: 121 tttcaaagtagatatgaaagtataataatcaatgaacttttccccaaaccctattctatt 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 562 tttcaaagtagatatgaaagtataataatcaatgaatttttccccaaaccctattctatt 503
Query: 181 aatgacagcattatagttctcaaaaaaattcagaaaatttattaacacaatgaaggagtt 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aatgacagcattatagttctccaaaaaattcagaaaatttattaacacaatgaaggagtt 443
Query: 241 gatatctggcaataccaggagctgcttctttaatttcagaagtcagataattttaaataa 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gatatctggcaataacaggagctgcttctttaatttcagaagtcagataattttaaataa 383
Query: 301 gttgtattatctatgatattatttttgtagcaacacattctgaatagtaattttattata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gttgtattatctatgatattatttttgtagcaacacattctgaatagtaattttattata 323
Query: 361 agaagaaaaatacaagaagagagtaaataagttccactcttataatttgagaaataaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agaagaaaaatacaagaagagagtaaataagttccactcttataatttgagaaataaatt 263
Query: 421 aatagataaatgaaatatatgagtacctgttttcatttgtgtacacttacatgtgtgtat 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gatagataaatgaaatatatgagtacctgttttcatttgtgtacacttacatgtgtgtat 203
Query: 481 aaggggctagtaactgctgcacaaaccacttagacaacaatctcagtcaaacaggtatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aaggggctagtaactgctgcacaaaccacttagacaacaatctcagtcaaacaggtatgg 143
Query: 541 tttattcaaagcacacccaggagctgaactgtgacacccagctacaatcctataaagcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tttattcaaagcacacccaggagctgaactgtgacacccagctacaatcctataaagcat 83
Query: 601 ttaagcctgaaatccacaaacatctgtgacaagct 635
|||||||||||||||||||||||||||||||||||
Sbjct: 82 ttaagcctgaaatccacaaacatctgtgacaagct 48
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
