BAC Information

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BAC

Clone NameMSMg01-059H24
Chromosome1 (Build37)
Map Location 60,340,850 - 60,341,437
singlet/doubletsinglet
Overlap geneNbeal1
Upstream geneAls2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf
Downstream geneCyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059H24.T7 (MSMg01no059_h24.b1)MSMg01-059H24.TJ (MSMg01no059_h24.g1)
ACCAG286163AG286164
length696685
length of high quality
(start - end)
520 (50 - 569)588 (72 - 659)
definitionCHROMAT_FILE: MSMg01no059_h24.b1 PHD_FILE: MSMg01no059_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:01 2005CHROMAT_FILE: MSMg01no059_h24.g1 PHD_FILE: MSMg01no059_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCGCG
CGGAATTCTTTGTTCAGTTCCGAGCCCCATTTTTTAATGGGGTTGTTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTT
GATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGCCTTCCATTCTATTCCATT
GGTCTACTTGCCTGTCTCTATACCAGTAACCTTGCAGTTTTTACCACAGT
TGCTCTGTACTTAAAGCTTTATGCCCGGTATTGGTGATTCTCCCCT
NTACATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCAACTGCTTCCTCTATCTAGTCTTTATG
AAAAACATTCTTAGGAATACTGTAGTGCTGCTGAGATGTGACTAGGGACA
GCTCAGACTTAGCTCTAAACCACATGAGTTCTGTAACTTGAGGAGGGAGT
AATTACTTGGAATTGAACCTAAGACTTTGCACATGTTAGACAACTTCTCA
GCCACTGGGCAATATCCTTGGTCTGATATCTAATAATAAATAACTGATTG
ATTTCTCAAAATGGTAGGGATTCCAAATGTACACTACAATAATAGTGGAA
AAAGTCATATTCAAATTTCTTATATATGAATTGATTTGAATGAGCTGTTC
TTAAACTACTCTGGCGGATTTTCTCTAGACTAAATCCTAGTAGAAAATTT
AAAAGCTGCGACTCCATCATTAGAACATGACATCAAAGTGACTAGTTCTG
AGTCTTACAACGAGAGGAAAATGGCTCGACTCTGAGCATACCGTCCACTC
TGAAGCTGGATGTGGAGGGTGGTGAATGGCTCCACGCGGATCAGATAGTG
CATGACGCCCGCAGAATTGGAATAGTGAGTACCATAGTGAAACTTATCAA
TTGTTCCCATTGGGTCCTCAAAATTCTCGTACCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_h24.g1 MSMg01no059_h24.g1 CHROMAT_FILE:
MSMg01no059_h24.g1 PHD_FILE: MSMg01no059_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:01 2005
         (588 letters)



>mm_chr1_60340454_60341441
          Length = 988

 Score = 1122 bits (580), Expect = 0.0
 Identities = 586/588 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaactgcttcctctatctagtctttatgaaaaacattcttaggaatactgtagtgctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 ccaactgcttcctctatctagtctttatgaaaaacattcttaggaatactgtagtgctgc 925

                                                                       
Query: 61  tgagatgtgactagggacagctcagacttagctctaaaccacatgagttctgtaacttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 tgagatgtgactagggacagctcagacttagctctaaaccacatgagttctgtaacttga 865

                                                                       
Query: 121 ggagggagtaattacttggaattgaacctaagactttgcacatgttagacaacttctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ggagggagtaattacttggaattgaacctaagactttgcacatgttagacaacttctcag 805

                                                                       
Query: 181 ccactgggcaatatccttggtctgatatctaataataaataactgattgatttctcaaaa 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccactgagcaatatccttggtctgatatctaataataaataactgattgatttctcaaaa 745

                                                                       
Query: 241 tggtagggattccaaatgtacactacaataatagtggaaaaagtcatattcaaatttctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tggtagggattccaaatgtacactacaataatagtggaaaaagtcatattcaaatttctt 685

                                                                       
Query: 301 atatatgaattgatttgaatgagctgttcttaaactactctggcggattttctctagact 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 684 atatatgaattgatttgaatgagctgttcttaaactactctggctgattttctctagact 625

                                                                       
Query: 361 aaatcctagtagaaaatttaaaagctgcgactccatcattagaacatgacatcaaagtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaatcctagtagaaaatttaaaagctgcgactccatcattagaacatgacatcaaagtga 565

                                                                       
Query: 421 ctagttctgagtcttacaacgagaggaaaatggctcgactctgagcataccgtccactct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctagttctgagtcttacaacgagaggaaaatggctcgactctgagcataccgtccactct 505

                                                                       
Query: 481 gaagctggatgtggagggtggtgaatggctccacgcggatcagatagtgcatgacgcccg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaagctggatgtggagggtggtgaatggctccacgcggatcagatagtgcatgacgcccg 445

                                                           
Query: 541 cagaattggaatagtgagtaccatagtgaaacttatcaattgttccca 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagaattggaatagtgagtaccatagtgaaacttatcaattgttccca 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)