BAC Information

Click to search

BAC

Clone NameMSMg01-059I16
Chromosome1 (Build37)
Map Location 126,288,887 - 126,431,684
singlet/doubletdoublet
Overlap genenone
Upstream geneDpp10
Downstream geneLOC666998, Actr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059I16.T7 (MSMg01no059_i16.b1)MSMg01-059I16.TJ (MSMg01no059_i16.g1)
ACCAG286195AG286196
length716713
length of high quality
(start - end)		617 (71 - 687)536 (75 - 610)
definitionCHROMAT_FILE: MSMg01no059_i16.b1 PHD_FILE: MSMg01no059_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:04 2005CHROMAT_FILE: MSMg01no059_i16.g1 PHD_FILE: MSMg01no059_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,288,887 - 126,289,503)(126,431,149 - 126,431,684)
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAATCCGCGG
AATTCATCCAGATTCCCGATTTAATGACTTGGGTTTGAATATGAGTCCTT
ATGATTAAAAAATATACATTCTTGCAGGTCGACTGCAGAGAATTTAGTGG
AAATTTGTCATCTCCCTAATCTTTATCCATTTTAAATATGTGTCTCAGCA
TGAGAAATAATTCTACATCTTCACTGGCTTCTTTGTTCTTGCCCTGTAAG
GTTGATCACTTAAGGTTTATCATCATGATCATCATATCATATATGATCTT
AAGGTATATCATCACAAAGAATTGTCTTCCAACTTTCATCCCATAGATAA
ATTAAAGATTTATAGGTATCTGTCAGTTGTTCAAATTATTTGTGTTTCGT
GATAGGACAATGTGTTATTTGTTTTTCTTATTGTTGTGACTGAATGCTTG
TTAAGAAGCAACTTAAAGGGCAAAGGAAGAGATGTTCACAGTTTCAGGGG
GCACAGCCCATCATAATGAGAAGTATACATTGGTAGATTTAGGAGGCTGC
CGGTCCCATTACATCCATATTAAAGAAGGAGAGGATGAATAAAAAATGAA
ACATGTCTATCAAACCTCAAGGACCACACTTCCCAGCAAGGGACCACCCC
TTAAAGGTCCCATAACCTTTCTAAGACGTGCCACCAGCTGGGGACCAAGT
GTTCAAATACACAAGT

NTCGATATAGTXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAAAGAGGTGA
ACTATAGAAGTATTCAGAAATTCTATAGTTTTTGCACTTTATTATCAGGT
AGCTCATTACTTTTTTTGTTATACTTGACACAGACTGAACAATACAAAAA
TATCTAGGTCAGCTTGCTCCCAACCTCACAGCCTCTGTTGATATATAATT
CAAGATAGAGCCATTCAACCTGTCATTCTTTCACTCAACAAATATATGTG
AAGTGCTACTACTTACAGAAATAAGGTGATAAGTACGTGTGTTGAAAAAA
AAATTAGGAACTGGTAGTACTGATATGACTGAATTGAAAAACTGTTTTCT
GTTCAAATGTAAGTTTCCAGGTTTGGATTCCTCATACCAAGTTAAAATCT
AGCCAAGAACAGTGCCTCGTGTCTGTAACTCAAGCAGAGAGGAAGCAGCG
ATGGATGGATCTTTGAAACTCACTGTCATCCTTTGACTCCATATATATTT
ACAGACTCACATGCACACAATAACACTAAAATAGCACAACAAATACCTCA
CAAATTTGAGTCCTGCATAATACTGTGAGTACATATGTGTGTGTGCAAAG
TGGTATGTTGATGTAGAGTGTGTCTACAAAATTTTTAGTATAGGATGTAT
GAGTATGACTAATTTGTATAGTGCGTACTTTCAATAACATGATACACAAT
AAAAAATGTGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_i16.b1 MSMg01no059_i16.b1 CHROMAT_FILE:
MSMg01no059_i16.b1 PHD_FILE: MSMg01no059_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:04 2005
         (617 letters)



>mm_chr1_126288687_126289703
          Length = 1017

 Score = 1069 bits (553), Expect = 0.0
 Identities = 601/617 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatgacttgggtttgaatatgagtccttatgattaaaaaatatacattcttgcaggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaatgacttgggtttgaatatgagtccttatgattaaaaaatatacattcttgcaggtc 260

                                                                       
Query: 61  gactgcagagaatttagtggaaatttgtcatctccctaatctttatccattttaaatatg 120
            |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 261 cactgcagagaatttagtggaaatttgtcatcttcctaatctttatccattttatatatg 320

                                                                       
Query: 121 tgtctcagcatgagaaataattctacatcttcactggcttctttgttcttgccctgtaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctcagcatgagaaataattctacatcttcactggcttctttgttcttgccctgtaag 380

                                                                       
Query: 181 gttgatcacttaaggtttatcatcatgatcatcatatcatatatgatcttaaggtatatc 240
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 381 gttgatcacttaaggtttatcatcatgatcatcttatcatatatgaacttaaggtatatc 440

                                                                       
Query: 241 atcacaaagaattgtcttccaactttcatcccatagataaattaaagatttataggtatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcacaaagaattgtcttccaactttcatcccatagataaattaaagatttataggtatc 500

                                                                       
Query: 301 tgtcagttgttcaaattatttgtgtttcgtgataggacaatgtgttatttgtttttctta 360
           |||||||||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||
Sbjct: 501 tgtcagttgttcaaattatttgggttttgtgataggacaatgtgtcattcgtttttctta 560

                                                                       
Query: 361 ttgttgtgactgaatgcttgttaagaagcaacttaaagggcaaaggaagagatgttcaca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 ttgttgtgactgaatgcttgttaagaagcaacttaaagggcaaaggaagagaggttcaca 620

                                                                       
Query: 421 gtttcagggggcacagcccatcataatgagaagtatacattggtagatttaggaggctgc 480
           |||||||||||||||||||||||||||| |||||| || ||||||| |||||||||||||
Sbjct: 621 gtttcagggggcacagcccatcataatgggaagtacaccttggtaggtttaggaggctgc 680

                                                                       
Query: 481 cggtcccattacatccatattaaagaaggagaggatgaataaaaaatgaaacatgtctat 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cggtcccattacatccatatttaagaaggagaggatgaataaaaaatgaaacatgtctat 740

                                                                       
Query: 541 caaacctcaaggaccacacttcccagcaagggaccaccccttaaaggtcccataaccttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaacctcaaggaccacacttcccagcaagggaccaccccttaaaggtcccataaccttt 800

                            
Query: 601 ctaagacgtgccaccag 617
           |||||| ||||||||||
Sbjct: 801 ctaagaggtgccaccag 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no059_i16.g1 MSMg01no059_i16.g1 CHROMAT_FILE:
MSMg01no059_i16.g1 PHD_FILE: MSMg01no059_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:04 2005
         (536 letters)



>mm_chr1_126430949_126431884
          Length = 936

 Score = 1006 bits (520), Expect = 0.0
 Identities = 532/536 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagtttttgcactttattatcaggtagctcattactttttttgttatacttgacacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atagtttttgcactttattatcaggtagctcattactttttttgttatacttgacacaga 677

                                                                       
Query: 61  ctgaacaatacaaaaatatctaggtcagcttgctcccaacctcacagcctctgttgatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctgaacaatacaaaaatatctaggtcagcttgctcccaacctcacagcctctgttgatat 617

                                                                       
Query: 121 ataattcaagatagagccattcaacctgtcattctttcactcaacaaatatatgtgaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ataattcaagatagagccattcaacctgtcattctttcactcaacaaatatatgtgaagt 557

                                                                       
Query: 181 gctactacttacagaaataaggtgataagtacgtgtgttgaaaaaaaaattaggaactgg 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gccactacttacagaaataaggtgataagtacgtgtgttgaaaaaaaaattaggaactgg 497

                                                                       
Query: 241 tagtactgatatgactgaattgaaaaactgttttctgttcaaatgtaagtttccaggttt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tagtactgagatgactgaattgaaaaactgttttctgttcaaatgtaagtttccaggttt 437

                                                                       
Query: 301 ggattcctcataccaagttaaaatctagccaagaacagtgcctcgtgtctgtaactcaag 360
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 436 ggattcctcataccaagttaaaatctagccaagaacagtggttcgtgtctgtaactcaag 377

                                                                       
Query: 361 cagagaggaagcagcgatggatggatctttgaaactcactgtcatcctttgactccatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cagagaggaagcagcgatggatggatctttgaaactcactgtcatcctttgactccatat 317

                                                                       
Query: 421 atatttacagactcacatgcacacaataacactaaaatagcacaacaaatacctcacaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atatttacagactcacatgcacacaataacactaaaatagcacaacaaatacctcacaaa 257

                                                                   
Query: 481 tttgagtcctgcataatactgtgagtacatatgtgtgtgtgcaaagtggtatgttg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tttgagtcctgcataatactgtgagtacatatgtgtgtgtgcaaagtggtatgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |