BAC Information

Click to search

BAC

Clone NameMSMg01-059J07
Chromosome1 (Build37)
Map Location 23,382,711 - 23,382,963
singlet/doubletsinglet
Overlap geneOgfrl1
Upstream geneRims1, Rims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356
Downstream geneLOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059J07.T7 (MSMg01no059_j07.b1)MSMg01-059J07.TJ (MSMg01no059_j07.g1)
ACCAG286225AG286226
length697699
length of high quality
(start - end)
417 (50 - 466)251 (72 - 322)
definitionCHROMAT_FILE: MSMg01no059_j07.b1 PHD_FILE: MSMg01no059_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:07 2005CHROMAT_FILE: MSMg01no059_j07.g1 PHD_FILE: MSMg01no059_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCTTTGTTCTTCCATGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGTAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTCCCCCTGTGCTTATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTACTT
GATTTAGCAATGTCTCTTTCCTGCAATTGATTTATACCTAAACGAGGGGC
TTTCCAGTTGTTCCTGCTTCTCCCTCGTGAGTACTCGTGATTTATCTCCT
TCTGCCATCTGCAGATAGAAACTGACTGGGTTGGATTACCCGCATTATCT
CTGCTTGGCTATGGGAGTGTCATTTAAAAGTGCCGACTTTCCTTGATCTT
TCCATTTCCACTGCGTTTTTTTGTCCTTTGCATTCCCCCTCACATGAGTT
TTCTACTTTTGAAACACCACGACACACAGCTATAACCCTAACACACG
TTCGATATAGTGTTAGGCCTGGCGGCCGCCTGGTTCCTAAATGGAGGGTG
AACTATAGAATGTTTCGCGAAATTCCTAATATAAAAGGGGGGCGAGAAGT
CAATTGAAATGACTCGGTTGCTATCAGGACAATAAAATGATGATATTATT
TCGGCTGCCTTATGGAAAGTGAATTGAGATTGCATTACCTCGATTTCATA
TGTGGTTAATTCTTTAGCATAAAAGTTCAAGCCTTGTTCTCTCAGAGGGA
AAAGCCTTGATTGTTAAAAAAAAAAAAAAAAAAAAGAAATAACAATTTTC
AGTTAACGTTGTCTTGAAAACCTTATATTAAACAGGACAGGGCTCACGGC
GGCGAGTGTGTTACTGACCATTGCATGTACGTGTGGTTGTGCTCCAGCTT
CTCGTATTCCCCTTTCCACTTATTTAGAACCTCTTCAATGTAAACACCTA
TGTGGCAAATATATTGAGAAAAATGGAACCATTCATTAAAAACATGGCGA
TGGTATTAAAACATGAGAGTTAACCCGACTCTTAATAGTGCTCACTTTAA
TAGCTACAATATAATGATCCTAAAAGTGGACTATCCTATGCCTTACCCCC
AGTAATGTTTATACCCCCATTAAATAAAGATAGCTTCCCTTCAGGTTTAC
CCATTGCTTTTTGTTTGCTGCTCCCAGGTTTGCCCAAGCATGGCCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_j07.g1 MSMg01no059_j07.g1 CHROMAT_FILE:
MSMg01no059_j07.g1 PHD_FILE: MSMg01no059_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:07 2005
         (251 letters)



>mm_chr1_23382511_23383160
          Length = 650

 Score =  460 bits (238), Expect = e-134
 Identities = 249/254 (98%), Gaps = 4/254 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctaatataaaaggggggcgagaagtcaattgaaatgactcggttgctatcaggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctaatataaaaggggggcgagaagtcaattgaaatgactcggttgctatcaggaca 260

                                                                       
Query: 61  ataaaatgatgatattatttcggctgccttatggaaagtgaattgagattgcattacctc 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaatgatgatattattt-ggctgccttatggaaagtgaattgagattgcattacctc 319

                                                                       
Query: 121 gatttcatatgtggttaattctttagcataaaagttcaagccttgttctctcagagggaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 320 gatttcatatgtggttaattctttagcataaaagttcaagccttgttctctcagggggaa 379

                                                                       
Query: 181 aagccttgattgttaaaaaaaaaaaaaaaaaaaa---gaaataacaattttcagttaacg 237
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 380 aagccttgattgttaaaaaaaaaaaaaaaaaaaaaaagaaataacaattttcagttaacg 439

                         
Query: 238 ttgtcttgaaaacc 251
           ||||||||||||||
Sbjct: 440 ttgtcttgaaaacc 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 650
Length adjustment: 9
Effective length of query: 242
Effective length of database: 641
Effective search space:   155122
Effective search space used:   155122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)