Query= MSMg01no059_k14.b1 MSMg01no059_k14.b1 CHROMAT_FILE:
MSMg01no059_k14.b1 PHD_FILE: MSMg01no059_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:13 2005
(537 letters)
>mm_chr1_180937191_180938126
Length = 936
Score = 1002 bits (518), Expect = 0.0
Identities = 533/538 (99%), Gaps = 2/538 (0%)
Strand = Plus / Plus
Query: 1 gcagtgagtgtgagtgacccaccaggggcaaagtgattagctaatttgccactacctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagtgagtgtgagtgacccaccaggggcaaagtgattagctaatttgccactacctttc 260
Query: 61 tccatgtactcagcaagttcttatttgtgaatatgtaggaccatctgcacaagagtcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccatgtactcagcaagttcttatttgtgaatatgtaggaccatctgcacaagagtcttc 320
Query: 121 attttcaatggatagcacgctctcttttttctttgtcacatagttcaggagtcagaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttcaatggatagcacgctctcttttttctttgtcacatagttcaggagtcagaatgt 380
Query: 181 cccccctggagcttacactggtctcagagggtaaacattataggtcaaaaaacaaaccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccccctggagcttacactggtctcagagggtaaacattataggtcaaaaaacaaaccaa 440
Query: 241 ccaaacaaacaatcttatataacaaaacaaaacaaaaacaacaaccacaacattttttaa 300
|||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaacaaacaaaca-ataaaacaaaacaaaacaaaaacaacaaccacaacattttttaa 499
Query: 301 aaagaaagaaagagagaaagaaaaggaagaaagagagaaagaaaaaatatttattgtgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaagaaagaaagagagaaagaaaaggaagaaagagagaaagaaaaaatatttattgtgtg 559
Query: 361 tgtccatgcacacaggtgccactgcccatatgtggaggtcagggg-agtcagttttcgcc 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 560 tgtccatgcacacaggtgccactgcccatatgtggaggtcagggggagtcagttttcgcc 619
Query: 420 tttgttcatgtgagtcttggatcaaaggttgtcagccaccttactgactgggagcatcct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttgttcatgtgagtcttggatcaaaggttgtcagccaccttactgactgggagcatcct 679
Query: 480 tctcaattccattgtctcagctcagacactgctttctctgatgtaccaccctctctgc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctcaattccattgtctcagctcagacactgctttctctgatgtaccaccctctctgc 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_k14.g1 MSMg01no059_k14.g1 CHROMAT_FILE:
MSMg01no059_k14.g1 PHD_FILE: MSMg01no059_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:13 2005
(488 letters)
>mm_chr1_181070508_181071395
Length = 888
Score = 882 bits (456), Expect = 0.0
Identities = 480/488 (98%)
Strand = Plus / Minus
Query: 1 tgtgtttggaactgacccggccctaacaatggttctgtgggggcctcacatggcatcatc 60
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 688 tgtgtttggaactgacccgaccctaacaatggttctgtggcggcctcacatggcatcatc 629
Query: 61 tctgttccctctgtcagatgaacaggacactagacctttctttcctcagactgggctgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tctgttccctctgtcagatgaacaggacactagacctttctttcctcagactgggctgtg 569
Query: 121 aatatgttgccgagtatcacagggagtcagaaaactgacctcttcttggctaggatgcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aatatgttgccgagtatcacagggagtcagaaaactgacctcttcttggctaggatgcag 509
Query: 181 tgaagcagtggcctgcacctcccggctatgtgcagtatgcatgctaccatctcgtttccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgaagcagtggcctgcacctcccggctatgtgcagtatgcatgctaccatctcgtttccc 449
Query: 241 agctctctgtgtattgcaagctcagtgagaggatttaagaagcactcattgctactatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 448 agctctctgtgtattgcaagctcagtgagaggatttaagaagcactcattgatactatgt 389
Query: 301 gataccaagcacgccctttgatgacccgcagtttacccgtcaagacaaacttagtgattt 360
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 388 gataccaagcacgccctttgatgacctgcagtttacctgtcaagacaaacttagtgattt 329
Query: 361 atcaaccatcaacgtgatactctcaggcaatgtgcctgagatctctgttatcttggttag 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atcaaccatcagcgtgatactctcaggcaatgtgcctgagatctctgttatcttggttag 269
Query: 421 tgaatagcctagacatgaaattccttaatttgactgtgttgataaataaacggtttattg 480
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 268 tgaatagcctagacatgaaattccttaatttggctgtgttgataaataaatggtttattg 209
Query: 481 tttagggt 488
||||||||
Sbjct: 208 tttagggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
