Query= MSMg01no059_l18.b1 MSMg01no059_l18.b1 CHROMAT_FILE:
MSMg01no059_l18.b1 PHD_FILE: MSMg01no059_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:18 2005
(582 letters)
>mm_chr1_21636499_21637481
Length = 983
Score = 1056 bits (546), Expect = 0.0
Identities = 570/578 (98%), Gaps = 1/578 (0%)
Strand = Plus / Plus
Query: 4 gaattcaacactctcacgttatgaaagacaatattagagacctggaaggcagtttaaaaa 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaacactctcatgttatgaaagacaatattagagacctggaaggcagtttaaaaa 263
Query: 64 aatgaatatttccatctaaccttaaaatgactcagaatgataggcctggaggataacaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatgaatatttccatctaaccttaaaatgactcagaatgataggcctggaggataacaat 323
Query: 124 tcttcacgtcccattttcctatttggtcacacacttgagagaaccaataaatgaccgttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcttcacgtcccattttcctatttggtcacacacttgagagaaccaataaatgaccgttc 383
Query: 184 ctgtttatctccctgctcatcctctatgggaataaatataaaaaaaaa-tggcagctcct 242
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 ctgtttatctccctgctcatcctctatgggaataaatataaaaaaaaaatggcagctcct 443
Query: 243 ctcctggagtgacctcttggatgcagcagatactgttagacttagcagaagaggcacgca 302
||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || |||
Sbjct: 444 ctcctggagtgacctcttggatgcagcagatactggtaggcttagcagaagagacatgca 503
Query: 303 tgcaatacatgcagttttagatctgattgtataggtgtagataagcttcaaacaaacagg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcaatacatgcagttttagatctgattgtataggtgtagataagcttcaaacaaacagg 563
Query: 363 ggccgatgagtatttgttgagtgagtgagaggatgtataaagaattcactgtggaggatg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggccgatgagtatttgttgagtgagtgagaggatgtataaagaattcactgtggaggatg 623
Query: 423 cattgatctcctcatttgagaagtaaggatcaagttgtaaatgcataatattgaagccat 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 624 cattgatctcctcatttgagaagtaaggatcaagttgtaaatgcataatattgaagacat 683
Query: 483 gttctgacatgtggatacttagtggagagaagtcactccaaggtggaccccatctgcagc 542
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 684 gttctgacatgtggatacttagtagagagaagtcactccaaggtggaccccatctgcagc 743
Query: 543 ttgattcaaatagtttaggtgattgagttaggtaggat 580
||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttgattcaaatagtttaggtgattgagttaggtaggat 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 983
Length adjustment: 10
Effective length of query: 572
Effective length of database: 973
Effective search space: 556556
Effective search space used: 556556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_l18.g1 MSMg01no059_l18.g1 CHROMAT_FILE:
MSMg01no059_l18.g1 PHD_FILE: MSMg01no059_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:18 2005
(542 letters)
>mm_chr1_21771968_21772909
Length = 942
Score = 617 bits (319), Expect = 0.0
Identities = 351/367 (95%), Gaps = 10/367 (2%)
Strand = Plus / Minus
Query: 1 tcaggaaacaaatcgaatacctgtcagggaagtgtttgtggaaagggggagaagtggacc 60
|||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 358 tcaggaaacaaatcaaatatctgtcagggaagtgtttgtggaaaaggggagaagtggacc 299
Query: 61 attgggaggaagtaaaggattcaatttagtgtcatgaattttaaaacgcatgaaatgcct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 298 attgggaggaagtaaaggattcaatttagtgtcatgaattttaaaacgcatgcaatgcct 239
Query: 121 ggagtcctaatgcaaaacataattagacaaatgtttaaatcatcatcatcgttgttgtca 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ggagttctaatgcaaaacataattagacaaatgtttaaatcatcatcatcgttgttgtca 179
Query: 181 tgtcatcatcatcatcagtgatggtgtgtttgtgagtgtgtataaatttatacacatgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tgtcatcatcatcatcagtgatggtgtgtttgtgagtgtgtataaatttatacacatgcc 119
Query: 241 aaaatgggttatataggtcagacgataacttttatggatcagttctctccttccattttg 300
|||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 118 aaaatg---------ggtcagacgataacttttatggatcagttctcgccttccattttg 68
Query: 301 ttttgaggcagagtctttcttgaaggtctgtgtactccact-agctgcctcctagagtca 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 67 ttttgaggcagagtctttcttgaaggtctgtgtactccactcagctgcctcctagagtca 8
Query: 360 ggagatt 366
|||||||
Sbjct: 7 ggagatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
