BAC Information

Click to search

BAC

Clone NameMSMg01-059N02
Chromosome1 (Build37)
Map Location 174,209,323 - 174,340,925
singlet/doubletdoublet
Overlap geneAtp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
Upstream genePpox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p
Downstream geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059N02.T7 (MSMg01no059_n02.b1)MSMg01-059N02.TJ (MSMg01no059_n02.g1)
ACCAG286407AG286408
length691697
length of high quality
(start - end)		522 (50 - 571)396 (77 - 472)
definitionCHROMAT_FILE: MSMg01no059_n02.b1 PHD_FILE: MSMg01no059_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:24 2005CHROMAT_FILE: MSMg01no059_n02.g1 PHD_FILE: MSMg01no059_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(174,340,407 - 174,340,925)(174,209,323 - 174,209,718)
sequence
TTTATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCC
GCGGAATTCTATCACTGTGCAATTGCATGACCTAATCCCATCACTTTGAG
AGGCTGAGGCAAGGGAACCATGAATTCAAAATAAGCTAGGGTTACATATC
TACATGGTAGACTTTTTTTTTTATCATTAGAGAGATAAAACTAAATGAGG
GTGGGCCCACAAAACTGAGAGACCCGTCTAATTCATCAAAGCAGTCAGTA
CCATAAGGTCTCACACCAAACACTGCTACTTCTTGGAAGCCAGGGCTCAG
TAGCCTGCTCGGCTATTTAATAAACTGGAACTTTTCTAACCAAAATATTT
TTTTCTAAGCATTGGATCAGGTAAATCAAAGCCTTGGCTCACTGGCTGGA
AAGTTAGGAAAACATCTGTATTTACTGATTAAACTTCTTTGGCCGTGTTA
ATAGAATCCTTGCATAAGCACATCACTTGGTAGAATTTAACAAATTTGTT
CTGGATTACTTTTATAAATAGAACAAACGAATACTACATTTAAAACTAAA
GCGGAATGTTTTGCACGATAAATGATAAAAAGGATGGCTTTGCATTCCGA
GAGTTTCTTAAACCCTAAGAAGAAATATCAGGTTCCCCCTTAAGTGGAGG
GGGGCAAAGGGGCACCTTGTAAGAGATTAGGAGGGGAGCGA

NCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATATTCCTCCAGGCCTGTGCTG
ATCTGCTGTCTAGTGGTCAGGATCTAGTCAGATGCCTGGGTGCAGCTCAC
CCCACCCCTATTCTGTGGGACTGCTCGACTCTGCCCTCTGGCCTCACCAT
ATCTGTCCCCAGGTCGATGCAGAGGATGGTCACAGTGCCCAGTGGAAGGG
GGATGTTGGCAATGATGAACAGCAGGAAGGGGGTGATCTCAGGGATGTTG
CTGGTCAGGGTGTATGCGATGGACTTCTTCAAGTTGTCAAAGATCAGGCG
GCCTGTGCAGAGGTTCTGAGGGCATCAGGGAGATCCAAGGGACCCTCCCC
ACCCTAGCCCCTGAGCTGTGGCTGGCTGCTTATTTTTCTAAGAGGAAGGT
TTAAAGCTGTAGCAGCGTGGAATCTTAGAGTGAAAGTCAGAGGAAAGAGA
AGGTCTGCCTTCAGACATCCTGGATGTCATGTAGCCTACATAGTCTCCTC
ACCCTCCTCCACGCCTGTCACATTGGAGGCTAAGTTGTCTGCCAAAAGGA
TCATGTCAGCCGTCCCTGCTTAGAGAATTCGGAGCCGGAAATGCCCATGG
TCATGCCAACGTCACCCTTCTTTAGCGCGTTTCATTTCTTCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_n02.b1 MSMg01no059_n02.b1 CHROMAT_FILE:
MSMg01no059_n02.b1 PHD_FILE: MSMg01no059_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:24 2005
         (522 letters)



>mm_chr1_174340108_174341029
          Length = 922

 Score =  996 bits (515), Expect = 0.0
 Identities = 518/519 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatcactgtgcaattgcatgacctaatcccatcactttgagaggctgaggcaa 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ggaattctatcactgtgaaattgcatgacctaatcccatcactttgagaggctgaggcaa 759

                                                                       
Query: 64  gggaaccatgaattcaaaataagctagggttacatatctacatggtagactttttttttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gggaaccatgaattcaaaataagctagggttacatatctacatggtagactttttttttt 699

                                                                       
Query: 124 atcattagagagataaaactaaatgagggtgggcccacaaaactgagagacccgtctaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 atcattagagagataaaactaaatgagggtgggcccacaaaactgagagacccgtctaat 639

                                                                       
Query: 184 tcatcaaagcagtcagtaccataaggtctcacaccaaacactgctacttcttggaagcca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tcatcaaagcagtcagtaccataaggtctcacaccaaacactgctacttcttggaagcca 579

                                                                       
Query: 244 gggctcagtagcctgctcggctatttaataaactggaacttttctaaccaaaatattttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gggctcagtagcctgctcggctatttaataaactggaacttttctaaccaaaatattttt 519

                                                                       
Query: 304 ttctaagcattggatcaggtaaatcaaagccttggctcactggctggaaagttaggaaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttctaagcattggatcaggtaaatcaaagccttggctcactggctggaaagttaggaaaa 459

                                                                       
Query: 364 catctgtatttactgattaaacttctttggccgtgttaatagaatccttgcataagcaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 catctgtatttactgattaaacttctttggccgtgttaatagaatccttgcataagcaca 399

                                                                       
Query: 424 tcacttggtagaatttaacaaatttgttctggattacttttataaatagaacaaacgaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tcacttggtagaatttaacaaatttgttctggattacttttataaatagaacaaacgaat 339

                                                  
Query: 484 actacatttaaaactaaagcggaatgttttgcacgataa 522
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 338 actacatttaaaactaaagcggaatgttttgcacgataa 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no059_n02.g1 MSMg01no059_n02.g1 CHROMAT_FILE:
MSMg01no059_n02.g1 PHD_FILE: MSMg01no059_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:24 2005
         (396 letters)



>mm_chr1_174209123_174209918
          Length = 796

 Score =  758 bits (392), Expect = 0.0
 Identities = 395/396 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatattcctccaggcctgtgctgatctgctgtctagtggtcaggatctagtcagatgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatattcctccaggcctgtgctgatctgctgtctagtggtcaggatctagtcagatgcc 260

                                                                       
Query: 61  tgggtgcagctcaccccacccctattctgtgggactgctcgactctgccctctggcctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtgcagctcaccccacccctattctgtgggactgctcgactctgccctctggcctca 320

                                                                       
Query: 121 ccatatctgtccccaggtcgatgcagaggatggtcacagtgcccagtggaagggggatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatatctgtccccaggtcgatgcagaggatggtcacagtgcccagtggaagggggatgt 380

                                                                       
Query: 181 tggcaatgatgaacagcaggaagggggtgatctcagggatgttgctggtcagggtgtatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcaatgatgaacagcaggaagggggtgatctcagggatgttgctggtcagggtgtatg 440

                                                                       
Query: 241 cgatggacttcttcaagttgtcaaagatcaggcggcctgtgcagaggttctgagggcatc 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 cgatggacttcttcaagttgtcaaagatcaggcggcctgtggagaggttctgagggcatc 500

                                                                       
Query: 301 agggagatccaagggaccctccccaccctagcccctgagctgtggctggctgcttatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggagatccaagggaccctccccaccctagcccctgagctgtggctggctgcttatttt 560

                                               
Query: 361 tctaagaggaaggtttaaagctgtagcagcgtggaa 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctaagaggaaggtttaaagctgtagcagcgtggaa 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |