BAC Information

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BAC

Clone NameMSMg01-060D19
Chromosome1 (Build37)
Map Location 71,040,511 - 71,040,787
singlet/doubletsinglet
Overlap genenone
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809
Downstream geneBard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060D19.T7 (MSMg01no060_d19.b1)MSMg01-060D19.TJ (MSMg01no060_d19.g1)
ACCAG286727AG286728
length710695
length of high quality
(start - end)
592 (38 - 629)288 (90 - 377)
definitionCHROMAT_FILE: MSMg01no060_d19.b1 PHD_FILE: MSMg01no060_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:55 2005CHROMAT_FILE: MSMg01no060_d19.g1 PHD_FILE: MSMg01no060_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATTCCA
CATTTACCTATGTTCTGTACCTTGACCAGTTTGGACTCCCCATGTTAATC
TACTGCTTCACTAATGAGCATTGAGCAATGCATTAATCTATGGGTATAGT
AATGAGTTGGTCTAATACTCTGTCCATATAGCAGTAGGTTCTCCCCGACC
ACCTATAACCTATCTAGCCACAGAGTCTCAGCACTGATAATGGTACCATG
TATGTATTATGGAGTGGGCCTTAAGTCCATCCAGAAAGTAGCTGGTTATT
CTCATGATGTTTGTGCCACTATTACACTAGTAGGGATTCTATTATAAGCC
AGTTGTTAGAACTTGCAGGATCCACAGCTGGGTAAGATTGGTGATTCCTT
TTCCCCCCACATACTGTACATAGCACCTCTCACTGCTGCAGAAGCTCACC
AGTAAAGCACGATGCTTCTAGGTCAGTACCTACTTGATATCTTCATTTTT
ATGACTTAAATACATTGTCTCTAGCAATTAGGTCTTACCATCAGTTTCTG
GAAGGAAAACAAGAGCATGATGCAGTGGCTAAAATGTTTTACAGTTTATG
GTATCTCACTGTCCAAAAACTCTAAAGATGTAAGTAGATCCTGGACTTTG
ACTATTTGTTAACCTAGTGTGTCTAGTATGGACGACGTCTAACCATCAAA
CGGGTGTTAG
CCCGTCCNNNTTATGCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGTCCATA
TAGCTGTATATCCCTTGATGTATTGTAAGACTATATATCTATTCACGTAC
GTACATAAAGATGGTCATGAGGGTCTATTTCACAAATGTCAACAGAGGTG
ACTAGAGGTCAGGGAGGGGGAATACATGAGAAAGGATCATGACATGAAAA
CAAGTGTATAAGCTAATGGGGGAGGTCTCATAAACTTATTTTTGCACAAT
TGAGATAAAGGATATGAAAAAGAAAAAAGAGGGGGCAGATGTGTGAGGGA
GCAGGGCTTCTGGAGGTGGCTGAGTGTCCATCNGTATCCAGTGACCTGCA
GAACAAGCCACCCCGTTCATGTTCCCTGTGCTGGTTCACACATGAGAGAA
CAACACTAGATGCATAGAGAAGTCTATCCCTCTGGAATTGTTTTGATGAC
AACAGTCAGGATGATGACAGCACTCAGATTTCATAGAAACAGACTAGGAA
ATACTGGAAGGTGGAAAATAATCCAATGTGCCCTTTTATTACAGCCTCCC
TTCAAATTACACGAAATCTTTTGACTACATTAAGAGAAAACTGTCGTCCA
GTTGCGTTTCTCCTTATAGCAATAGGCAGAAGGCTCTGTGCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_d19.g1 MSMg01no060_d19.g1 CHROMAT_FILE:
MSMg01no060_d19.g1 PHD_FILE: MSMg01no060_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:55 2005
         (288 letters)



>mm_chr1_71040275_71040962
          Length = 688

 Score =  474 bits (245), Expect = e-138
 Identities = 272/285 (95%), Gaps = 9/285 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   agtccatatagctgtatatcccttgatgtattgtaagactatatatctattcacgtacgt 63
           |||||||||||||||||||||| |||       ||||||||||||||||| |||||||||
Sbjct: 513 agtccatatagctgtatatcccctga-------taagactatatatctatccacgtacgt 461

                                                                       
Query: 64  acataaagatggtcatgagggtctatttcacaaatgtcaacagaggtgactagaggtcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acataaagatggtcatgagggtctatttcacaaatgtcaacagaggtgactagaggtcag 401

                                                                       
Query: 124 ggagggggaatacatgagaaaggatcatgacatgaaaacaagtgtataagctaatggggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggagggggaatacatgagaaaggatcatgacatgaaaacaagtgtataagctaatggggg 341

                                                                       
Query: 184 -aggtctcataaacttatttttgcacaattgagataaaggatatgaaaaagaaaaaagag 242
            | ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 340 ca-gtctcataaacttatttctgcacaattgagatataggatatgaaaaagaaaaaagag 282

                                                        
Query: 243 ggggcagatgtgtgagggagcagggcttctggaggtggctgagtg 287
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggggcagatgtgtgagggagcagggcttctggaggtggctgagtg 237


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)