Query= MSMg01no060_g13.b1 MSMg01no060_g13.b1 CHROMAT_FILE:
MSMg01no060_g13.b1 PHD_FILE: MSMg01no060_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:08 2005
(601 letters)
>mm_chr1_15914766_15915771
Length = 1006
Score = 994 bits (514), Expect = 0.0
Identities = 576/606 (95%), Gaps = 19/606 (3%)
Strand = Plus / Plus
Query: 4 ggaattccagcctttccaaa-attttatgactagtagctcactgagtg----aaaaatgt 58
||||||||||||||| ||| |||||||| |||||||||||||||||| ||||||||
Sbjct: 204 ggaattccagcctttggaaacattttatgcctagtagctcactgagtgtttgaaaaatgt 263
Query: 59 cattgacatttaaatggattcaagaattttaaaacaactgctttctaaaaatatccgtac 118
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 cattgacatttaaatggattcaaggattttaaaacaactgctttctaaaaatatccgtac 323
Query: 119 tacttaaagcacacatgtgcgtaaacttgcattgcccggtgccttcattatatacctgaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacttaaagcacacatgtgcgtaaacttgcattgcccggtgccttcattatatacctgaa 383
Query: 179 aaagagaaaaaacaattgcaaaaaaatatttagaaatatcacttccttactcacaggaaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagagaaaaaacaattgcaaaaaaatatttagaaatatcacttccttactcacaggaaa 443
Query: 239 agtattggctagggttacatgtatgtgtgtatttaagagtgtgtgtgttagtaaattctg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtattggctagggttacatgtatgtgtgtatttaagagtgtgtgtgttagtaaattctg 503
Query: 299 catgcatatacataggtcttctcaagtgttttcaagtgtgtagcatatactcagtcatgt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catgcatatacataggtcttctcaagtgttttcaagtgtgtagcatatactcagtcatgt 563
Query: 359 atgtgtataa------cccaccccatgcgtatgaaagccagaggggccctccagtgtaat 412
|||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgtgtataaggatgtc-------atgcgtatgaaagccagaggggccctccagtgtaat 616
Query: 413 tgatcacatgccatcagcattttaattttttgatgttttgacagggtcttcccttggcct 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 617 tgatcacatgccatcagcattttaattttttgatgttttgacagggtcttccct-ggcct 675
Query: 473 ggaactcatagcacaggctagcatggttgagcagagactcatcaagggtctgcttatctc 532
|||||||||||||||||||||||||| |||||||||||||||||||||| || || ||||
Sbjct: 676 ggaactcatagcacaggctagcatggctgagcagagactcatcaagggtgtgattgtctc 735
Query: 533 cacatttgcagctctggaattgtggtcacctgccaccccacctggtttttggaatgtagt 592
|||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 736 cacatttgtagctctggaattgtggtcacccgccaccccacctggtttttgaaatgtagt 795
Query: 593 ttttgg 598
||||||
Sbjct: 796 ttttgg 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1006
Length adjustment: 10
Effective length of query: 591
Effective length of database: 996
Effective search space: 588636
Effective search space used: 588636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_g13.g1 MSMg01no060_g13.g1 CHROMAT_FILE:
MSMg01no060_g13.g1 PHD_FILE: MSMg01no060_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:08 2005
(569 letters)
>mm_chr1_16083763_16084731
Length = 969
Score = 760 bits (393), Expect = 0.0
Identities = 470/525 (89%), Gaps = 50/525 (9%)
Strand = Plus / Minus
Query: 1 ttttagttatacaaagtacacatacgtgtttttattggaggtagaatcatgtgcttcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ttttagttatacaaagtacacatacgtgtttttattggaggtagaatcatgtgcttcctg 460
Query: 61 gactggccttgaactt-----------------------atcaagcccagcttcagcatg 97
|||||||||||||||| ||||| |||||||||||||||
Sbjct: 459 gactggccttgaacttactgtgatgaccttgaactaaggatcaaacccagcttcagcatg 400
Query: 98 ctgggaaaatattccaccgcaaagtccatctcactgctctgctacctccagtttttcacg 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctgggaaaatattccaccgcaaagtccatctcactgctctgctacctccagtttttcacg 340
Query: 158 aggggctagctttcactaccctggtatcacagcctggatctaatctgaattggctttctt 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aggggctagctttcactaccctggtatcacagcctggatctaatctgaattggctttctt 280
Query: 218 ttgtt-----ttgttttgtt----------cgagacagggtttctctgtatagccctggc 262
||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 279 ttgttgttttttgttttgttttgtttttttcgagacagggtttctctgtatagccctggc 220
Query: 263 tgtcctggaactcactttgtaaaccaggctggcctcgaactcagaaatctgcctgcctct 322
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tgccctggaactcactttgtaaaccaggctggcctcgaactcagaaatctgcctgcctct 160
Query: 323 gcctcccgag--ccccccc----attaagggcgtgcgccaccacgccaggctgaattggc 376
|||||||||| | ||||| |||||||||||||||||| ||||||||||||
Sbjct: 159 gcctcccgagtgc------tgggattaaaggcgtgcgccaccacgcccggctgaattggc 106
Query: 377 tttcttaacagggaacttcaatactgatgttctcagtgttaagcagtgtgaggcatgctg 436
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 105 tttcttaacagggaacttcaatactgatgttctctgtgttaagcagtgtgaggcatgctg 46
Query: 437 atgttgagatcttactaagtaggtgaggtgctggtccaaggtagg 481
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 atgttgagatcttactaagtaggtgaggtgctggtccaaggtagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
